Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0473 |
Symbol | |
ID | 8708837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 517199 |
End bp | 518017 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 646482587 |
Product | thiamine diphosphokinase |
Protein accession | YP_003373714 |
Protein GI | 283782960 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1564] Thiamine pyrophosphokinase |
TIGRFAM ID | [TIGR01378] thiamine pyrophosphokinase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCGTT ATTATGTTGC TATGGAACCT TTGCAACGCT GCGTAGTATT AGCAGCAGGA GATTATTACG ATCATACGCG TGAGCATGTG CCAGATCGCG CTTTAACAAT TGCAGCTGAT GGAGGCTGGG ATCATGCATG TAAATTAGGT TTGCATGTGG ATGCGCTCAT CGGCGATTTT GACTCTGTTA GATTAAAGCT CCCTACTGAT GCAGTTATTA CTAGATTGCC TGCAGAAAAA GATGATCCGG ACTTACTTTC TGCGTTGAAA GTCGGTTGGG CTAAAGGCTC TCGAGAATTT CATATTTTCG GAGGATTAGG TGGTCGAGTT GACCATACTA TTTCTAATAT TCAACTTATG GTTCGTTTAG CGCGTCGCGG TGGAATTGGA TTCTTGTACG GCGACGGTCA AATTGTTACA GCAATACATG ATGGATCTCT TGATTTTCCA GCATCATCTG GAAATGATTT GCGCATAGTT TCCGTTTTTT CTCATACTCC AGTTTCTAAT GATGTAAATG AAGTTGGATT AAAGTATCAG CTTAAACACG CAACCATGCA TGGAGATGCA GTACAAGGTT TAAGTAACGA ATTATTAAAT GATACGCCGG CTCATATTGA CGTTCATGAA GGAACACTTA TTGTAACCTT CCCTATTAAC GCTCCATTGC CACAGGTGAG CTGGTTTAAA AGACCAATTG GAGATTTAGG CGAAGTTGAT GCTTCTATAT CGGAAGCATT AGCAGTTCCT CTTGAAAGCG AGACTACTCC AACATATTCG ACTACTGCAG CTGCTGAAGC AATGACGTAT AACGAATAG
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Protein sequence | MQRYYVAMEP LQRCVVLAAG DYYDHTREHV PDRALTIAAD GGWDHACKLG LHVDALIGDF DSVRLKLPTD AVITRLPAEK DDPDLLSALK VGWAKGSREF HIFGGLGGRV DHTISNIQLM VRLARRGGIG FLYGDGQIVT AIHDGSLDFP ASSGNDLRIV SVFSHTPVSN DVNEVGLKYQ LKHATMHGDA VQGLSNELLN DTPAHIDVHE GTLIVTFPIN APLPQVSWFK RPIGDLGEVD ASISEALAVP LESETTPTYS TTAAAEAMTY NE
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