| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0399 |
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| Symbol | |
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| ID | 8709347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 429225 |
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| End bp | 429947 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482515 |
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| Product | NlpC/P60 family protein |
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| Protein accession | YP_003373648 |
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| Protein GI | 283782894 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAAAAC AAAGTAGAAT TTTCTCAGTT TTTGTATCAG CTGCCGCTGC AGCTTCAATG
CTTACTGTTA TGGCGCCATT CGCCATGGCA GAGTCTTCGC ATGAGCTTTC CGAGTCAGCT
GTCACTTCTA CGCGCGCATT TCCAAAGGTG ACGAATGTGC CTCGCGATAT TTTAACTGAA
TCTACTTCTA CTGATGTCGA TACAAATTCT CATTGGGGTG GCATAGAAAG CTTGAATGTA
CCTCAAACTA AGACTCCTAG CGAACAAGCT GCTGAAGTGG CACGCCGTGC TTTTGCTGGA
AATGCTGCTG CAAGCCGTTC TGGTTTCCGC AGTGGTGTTG AGCAGGTTCC TCTTGCTTCT
GTAGTTCCTC CTGACGATAA GTCTGTTGCT TCTCTTTTGA ATTTTGCTAC TCAATTCTTA
GGCAAAGTTC CGTATCGTAG TGGTGGCAAT ACTCCTGCTG GATGGGATTG CTCCGGTTTT
GTGCAGTATG TTTTTGCTAG TGTTGGTGTT TCTTTGCCTC GTACTTCTGG AGCGCAGGCA
ACTGTTGGAA CCCCAATCCC AAGTTTGGCT CAAGCGCAGC CTGGAGATAT TATCGCGAAT
GCGCAGCATG CTTCTATTTA TGTTGGTAAC GGCATGGTAA TTAATTCGCA GCTTGCTGGC
ACTAAGTACG ATCCTATCCG CTGCGTGTTC CCAGGCGGAT ACTCTATTCG TCGCGTTCTG
TAG
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| Protein sequence | MLKQSRIFSV FVSAAAAASM LTVMAPFAMA ESSHELSESA VTSTRAFPKV TNVPRDILTE
STSTDVDTNS HWGGIESLNV PQTKTPSEQA AEVARRAFAG NAAASRSGFR SGVEQVPLAS
VVPPDDKSVA SLLNFATQFL GKVPYRSGGN TPAGWDCSGF VQYVFASVGV SLPRTSGAQA
TVGTPIPSLA QAQPGDIIAN AQHASIYVGN GMVINSQLAG TKYDPIRCVF PGGYSIRRVL
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