| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0329 |
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| Symbol | cysS |
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| ID | 8709735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 357067 |
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| End bp | 358833 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482446 |
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| Product | cysteine--tRNA ligase |
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| Protein accession | YP_003373583 |
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| Protein GI | 283782829 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0215] Cysteinyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00435] cysteinyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.608913 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTTTCGC GCGCGCTGTG CTACGCTCAA GCAGGTCGTC GCGCCAACGC GAGAAAAGTT
GCGCACGTTT GGAGTAATAA ACAAAGCAAT GCCAAATCGC AGTATAAAGA AGCATTTATA
ATAGCAATTA TGCTTAATAA GAGTTTGAAC GAAGAGACTG CAAAAGTTAC TAAAGCCGCA
GAAAACCTGC ACTTATACAA CACGGCTTCA CATTCAACGA ACACTTTCGT ACCTAAAAAG
CATGGTCAAG TAGGCATGTA CGTGTGCGGC GCAACAGTGC AAAGTTCTCC GCATATTGGT
CATATTCGCG CAGCAATCGC ATTCGATATA ATCCGTCGCT GGATGCTGCG TTTAGGATAC
AAAGTCACGT TTGTTAGAAA CGTCACAGAT ATTGACGACA AAATTATGAA AAAAGCCAAC
GAATCAGGGC AAAATTGGTG GGAACGAGCA TATATTTACG AGCGCGAATT TACAAAATCC
TACAATACTT TAGGAGTGCT TGCGCCAACA GTTGAGCCAC GCGCAACAGG TCATATTACA
GACATGGTTG AGCTGATTGA ACGCTTAATC GAACGCGGTC ACGCATATGT TATTAAAGAC
AATGACGGAA ATCCTACTGG AAATGTCTAT TTTGACGTGC CAAGTTGGGA GCATTACGGC
GAATTAACGC ACCAAAATCA GAACCAAAAT GAAACTTGCG CAGATGAAGC CGCAGCTATC
GCAGACGCGA AAGGTCCAAG CGTAGACGCT GCCGAAAACG ATATTTACAA TCCAACAGAT
CCTGCAGATG CTTCACCAGA CAAACACGAT CCTAGGGATT TCGCACTTTG GAAAGCACCT
TGCGATTTCG ATCAGCCGGA TGCGCGCTGG AAAACTCCTT TTGGCGAGGG ACGCCCTGGT
TGGCATATTG AATGCTCTGC TATGAGCCAT CGTTATCTTG GAAATGATTT CGATATTCAC
GGAGGCGGCC TGGATTTGCG TTTCCCTCAC CACGAAAACG AAATGGCACA AACGCGTGCT
GCTGGATGGG AAAGCGCCAA TGTGTGGATG CATTCAGCAT GGGTTACCGC CAAAGGTGAA
AAAATGTCAA AATCGTTGGG AAATGGGCTT TCCGTACCAG TAGTTTTGGC AAATAATTCG
GCTTGGGTTG TGCGATATGC TTTGGGAGCA GTGCAATATC GCGCAATGTT GGAGTGGTCT
GACCAAGCTT TGGTGGAGTC AAAATCGGCT TATGATCGCA TTATGAACTT CCTCGAGAGA
GCTGACAGAT TGCTTGACAA GAAGCCAACT TGCGAAGAAG TGCGCTCTGT TAACGCAGAC
GAGCTTCCGG AAGATTTCAC TCGCGCTATG AACGATGACA TTAACGTTTC TGGCGCAATC
GCAGAAATAT TTACTACAAT TCGTCAAGGA AATACTCTTA TTGACGACTG CAGCAAAGAT
TCTTCACAAG CGCAAAGCGA AAGCATACAA AAGCTCATAT ATCTCGCTGT TTTGCAAGTG
CGAGCTATGT TAGATACTTT GGGCTTGGAT CCTTACGCAA AAACGTGGGC TTCGAACAAT
AATCAATCGC CTGCAGAAGG CTCAAACGGC AAGGAAAGCA AAGAACACTC AGCTTTGGAC
TCTTTAATTA CTTTGCAACT TAAAGCTAGA GCAGATGCTA GAAAAGCAAA GGATTTTGCT
ACTGCAGATG CTATTCGCGA CGCGTTAAAT AACGCAGGAA TTGTAATTGT CGATACTTCG
CAAGGATCAT CTTGGCATTT GCAATAA
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| Protein sequence | MLSRALCYAQ AGRRANARKV AHVWSNKQSN AKSQYKEAFI IAIMLNKSLN EETAKVTKAA
ENLHLYNTAS HSTNTFVPKK HGQVGMYVCG ATVQSSPHIG HIRAAIAFDI IRRWMLRLGY
KVTFVRNVTD IDDKIMKKAN ESGQNWWERA YIYEREFTKS YNTLGVLAPT VEPRATGHIT
DMVELIERLI ERGHAYVIKD NDGNPTGNVY FDVPSWEHYG ELTHQNQNQN ETCADEAAAI
ADAKGPSVDA AENDIYNPTD PADASPDKHD PRDFALWKAP CDFDQPDARW KTPFGEGRPG
WHIECSAMSH RYLGNDFDIH GGGLDLRFPH HENEMAQTRA AGWESANVWM HSAWVTAKGE
KMSKSLGNGL SVPVVLANNS AWVVRYALGA VQYRAMLEWS DQALVESKSA YDRIMNFLER
ADRLLDKKPT CEEVRSVNAD ELPEDFTRAM NDDINVSGAI AEIFTTIRQG NTLIDDCSKD
SSQAQSESIQ KLIYLAVLQV RAMLDTLGLD PYAKTWASNN NQSPAEGSNG KESKEHSALD
SLITLQLKAR ADARKAKDFA TADAIRDALN NAGIVIVDTS QGSSWHLQ
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