Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0287 |
Symbol | truB |
ID | 8709817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 307702 |
End bp | 308805 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482405 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_003373542 |
Protein GI | 283782788 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCATAC CAGATTCAGG ATTACTGCTT GTAGATAAGC CGCAAGGTGT TACAAGTCAC GATATTGTTG CATGCGCTCG TCATTTGTTG CATACAAAGC GAGTTGGGCA CGCAGGAACG CTTGATCCTA TGGCAACAGG ATTGCTAATC ATAGGTTTTG GCAACGCAAC GCGACTTTTA AATTACATGT TGGGGCACAA TAAAACCTAT GAAGCAGTAA TCCGCTTAGG AGAAGCAACT ACTACTGATG ATGCAGAAGG TGAAATTCTT CCGGATGACG CATTAAATAT AGGTCCGGGG GTTCACGTCG CTAATAAAGA CATGTCTTTT GAAAAGTCAC TGTCTTTTGA GCGAATTAAG CAAGTTGTTA GCGAAAATTT AGTAGGCAAA ATTATGCAAG CTCCTACTGC TTTTTCTGCT ATTAAAATTA ATGGTCAACG CGCTTATGAT TTAGCGCGCG AAGGAAAATC AGTAGAGATT GCTCCTAGAG AGATATTTGT TAGTGATTTT TCAGTGAGCA ATCCTCGAAT TACTAGGGGA GTGAGTGGGA AACTCGTATG CGATATATCT GCAAAAGTTT CTTGCAGTAG TGGAACATAT ATTCGCGCTT TAGCTCGTGA TTTAGGTCGC TTACTAGGAG TTGGTGGACA TCTTACTCAG CTTCGTCGCA CTAGCGTTGG TGATTTTTCG GTTACTGATT CGCGAGTTCT TAAACTTCGC TCGCAAATGC GAGAATTTAC TGATCGCAAT GGAGTATTGC AGCATCGCTC AAAAGCAGTT CCTAGTGACG ATTTTGACGC AAATAATATG CTTCCTAAAA TTTGCTTAAA TATGATGGAT GCAGCTTCGC ATTCGCTTCC AACTTTAAGC ATTGATGAGA ATCAAGCTAA AGACTTGCGT TTTGGGCGCT GGATTGAGCT TAAATCTGGC ATAAATTACG AAAATTATCC TGCAATAGCG TACGTTCCAA ACGCAAATAC TGAGGAATGT GACGTTGTTG CAGTAGTTGA ATTGACAAAA AATATAAAAA GTAATCAAAT CAAACCAATT GTGGTATTTC CGGCAAGCGA GAAGACTGGT AAACTAGATA AGTATTTAAA ATAA
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Protein sequence | MCIPDSGLLL VDKPQGVTSH DIVACARHLL HTKRVGHAGT LDPMATGLLI IGFGNATRLL NYMLGHNKTY EAVIRLGEAT TTDDAEGEIL PDDALNIGPG VHVANKDMSF EKSLSFERIK QVVSENLVGK IMQAPTAFSA IKINGQRAYD LAREGKSVEI APREIFVSDF SVSNPRITRG VSGKLVCDIS AKVSCSSGTY IRALARDLGR LLGVGGHLTQ LRRTSVGDFS VTDSRVLKLR SQMREFTDRN GVLQHRSKAV PSDDFDANNM LPKICLNMMD AASHSLPTLS IDENQAKDLR FGRWIELKSG INYENYPAIA YVPNANTEEC DVVAVVELTK NIKSNQIKPI VVFPASEKTG KLDKYLK
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