Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0271 |
Symbol | secY |
ID | 8709206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 293258 |
End bp | 294601 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646482390 |
Product | preprotein translocase, SecY subunit |
Protein accession | YP_003373528 |
Protein GI | 283782774 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0201] Preprotein translocase subunit SecY |
TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAACGT TAATCCAGGC CTTCAGGACG AAGGAGTTGA GGAACAAGAT CCTCTTCGTC TTCGCTATGA TAATTATTTA TCGTATTGGT TCATTTATTC CGATTCCGGG TGTGGACTAT AAAGTTGTGC ACGCTTGCAC TGTTAAATTA GCTTCATCGA GCGAGAACTT TATTGGGTTA GTTAACTTGT TCTCAGGTGG CTCGCTGTTG CAGCTTTCTA TTTTTGCTTT GGGTGTTATG CCTTACATCA CTGCTTCCAT TGTGATTCAG CTTTTGCGCG TGGTTATTCC TCGCTTCGAA GCTCTTCATA AGGAAGGTCA GTCTGGAGAA ACAAAGCTTA CGCAGTACAC GCGTTACCTA ACTATTGGAT TGGCAATTTT GCAATCTACT ACGATTTTGG TAACAGCACG TACGGGTGCT TTGTTTAATT ATCAGTGCGG AAATAATATT ATTCCAGACG GAAGCATGTG GAGCCTTATT GTCATGGTTT TGATCATGAC TGGCGGCACT GGTCTTATTA TGTGGATGGC AGAACTCATT ACCGATAAGG GTATCGGTCA AGGCATGTCT GTCTTAATCT TTATGTCTAT TTGCTCTGGC TTCTTACCAA AGCTTTGGGA GATTGGTTGG GGAACCAACG GTTCTAATGG CGATTGGAAT AAGTTCGCTA TTGTTGGTGG CGTTTTGATT GTTATCCTCA TATTTGTTGA CTTTGTTGAG CTTGCTCAGC GTCGTATTCC TGTGCAGTAT ACGCGTCGCA TGATTGGCCG AAAAATGTAT GGCGGCTCTT CGACTTATTT GCCATTAAAG GTAAATATGA GTGGTGTTAT TCCACCAATC TTTGCTTCGT CAATTCTTGC TGTTCCTACC CTTATTGCTC AGTTTGGAGA TAAGAGCAAG GCTTGGGTGA ATTGGATTGA AGCTAATTTG GCTAATTCCA CTTCTGCTTG GTATATTGCG TTTTACACAG TAATGATTGT GTTCTTCTGC TTCTTCTACA CAGAGATTAC TTTTAATCCT GATGAGACTG CAGATAACAT GAAAGAGTAT GGTGGCTTCA TACCAGGCAT TCGCGCTGGT AGTGCTACAA GTCATTATCT TAGCTATGTT ATGAATAGGT TGAATACTGT CGGTGCTATT TATTTGCTCT TTGTTGCATT GATTCCTACC GTTTTGATTA TGGCTTTGCA TTTGAATACA AAATTGCCAT TTGGTGGTAC AACAATTTTG ATTATTGCTG GCGTTGGTTT GGATACGTTG CGTCAAGCAA AGGCTCAGAC TGAACAATTC CAGTATGCTG GTTTCTTGTT CAAGCATGAT GAGCAAAAGC AAGTATCTAA GTAA
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Protein sequence | MKTLIQAFRT KELRNKILFV FAMIIIYRIG SFIPIPGVDY KVVHACTVKL ASSSENFIGL VNLFSGGSLL QLSIFALGVM PYITASIVIQ LLRVVIPRFE ALHKEGQSGE TKLTQYTRYL TIGLAILQST TILVTARTGA LFNYQCGNNI IPDGSMWSLI VMVLIMTGGT GLIMWMAELI TDKGIGQGMS VLIFMSICSG FLPKLWEIGW GTNGSNGDWN KFAIVGGVLI VILIFVDFVE LAQRRIPVQY TRRMIGRKMY GGSSTYLPLK VNMSGVIPPI FASSILAVPT LIAQFGDKSK AWVNWIEANL ANSTSAWYIA FYTVMIVFFC FFYTEITFNP DETADNMKEY GGFIPGIRAG SATSHYLSYV MNRLNTVGAI YLLFVALIPT VLIMALHLNT KLPFGGTTIL IIAGVGLDTL RQAKAQTEQF QYAGFLFKHD EQKQVSK
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