| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0241 |
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| Symbol | |
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| ID | 8709843 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 267073 |
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| End bp | 268704 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646482360 |
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| Product | amino acid permease |
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| Protein accession | YP_003373499 |
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| Protein GI | 283782745 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0531] Amino acid transporters |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAATAT GGAGAAAAAA GTCTGTTGAA CAGACTATCG CTGAGACTAT GGATGGTGAA
CGCCATCTTA AACGTACATT AAATGCTTGG GATTTGGCAG TTATGGGTGT TGCTGTCGCT
GTTGGTGCCG GTATTTTCTC TGTTGGCGCT CAGGCTGCAG CATTTCATGC TGGTCCTGCT
GTAATTATTA GCTTTATTAT TGCAGGCATT GTATGCGGTT CTGCTGCAAT GTGTTACGCA
GAATTTGCTT CTATGATTCC AGTTGCTGGA TCTGCTTATA CGTTTACATA TACTACAGTT
GGTGAGCTTA TTGCTTGGAT TATTGGCTGG GATATGATCC TAGAAATGCT GATGGCTGGC
TCAGTAATTG CAAAGTATTG GGGCGTTTAT CTTAACGATT TAATGAAGCT TTTCGGTTTG
AATATGACCA CAAGTTTTAA CTTAGGTGGT TTCACTATTG ATGTTGCTCC GATTATAATC
GTTGCATTCT TTACAACTAT GCTTGTCCTT GGAACTAAGC TTTCTGCACG CTTCGACGGC
GCTTTAACAA TCTTGAAGAT TGGTATCGTT CTATTCGTGG TTGTTGTGGG CTTCTTCTAC
ATTAAAGCTT CCAACTTTAC GCCATTTGTG CCACCTGCAA CCGACGCTGC AAGTGTAAAG
GGAATAGAAG TCTCTGGGGT TATGGCACAG CCTTTGTGGC AGTGGGTAAC AGGCATGCAG
CCAGCTGTTT ATGGCGTTCC AGGTATTCTT TCCGGCGCGG CTCTCGTGTT CTTCGCATTC
ATCGGTTTTG ATGTTGTTGC AACAACAGCA GAAGAAACTA AGGATCCGCA CAAGAACATT
CCACGAGGCA TTGGCCTTGG TTTGTTTATC GTTACTGTTC TTTACATCCT CGTCGCGGTC
GTAACAACTG GTATGGTTTC CTATAAGGAT TTGGCAAAGC AAGCCGCTCC TTCGCTTTCT
ACAAGTTTCG AACTTGTGGG TGCTACTTGG GCTGCAAAGA TTATTTCCCT CGGTATTGTT
ATTGGTTTAA CAACCGTTGT GATGGTGCTT TTGCTCGGTC TTACGCGCAT TATCTTCGCT
GTGAGCCGCG ATGGCTTGCT TCCACGTAGC TTCTCTAAGG TAAGCAAGCG TGGTATTCCT
GCAAGACTTC AGATTGTTGC TGGTATTGTC GTGGCAGTCG TTGCTTCCAC TCTCGATATT
GGCATTCTTT CCGACATGGT GAACATTGGT ACGCTTTCTG CATTCCTGCT TGTTTCTGCT
GGTGTGCCGA TTATGCGTAT GCGCAGACCA GATTTGCACC GTTCATTTAG CGTTCCTGGC
AATCCATGGC TTCCGCTGTT TGCAGCACTT TCTACATTCT GGCTCATGCT TAACTTGTCT
GTATTGACTT GGATTCGTTT TGCAGTGTGG CTGGCAATAG GCTTTGCGGT ATACTTCGGC
TACTCTTACC GCAATTCTTT GCTTGGCAGG CAGTTACGTA AAGCTAAGCA GCTCGGTGTT
CCGGTTGAAA CTTTGTTTGC TCAAGATGCT GCTGCTGCAG AGAAGGTAGC TGAAGGAGAA
ACAGAGGAGC AGGCTCGTGC AGAAGCTCAA GCTGAGGTGA CTGCTGCAGC CTCGCAAGAT
AGTCAAAATT AA
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| Protein sequence | MQIWRKKSVE QTIAETMDGE RHLKRTLNAW DLAVMGVAVA VGAGIFSVGA QAAAFHAGPA
VIISFIIAGI VCGSAAMCYA EFASMIPVAG SAYTFTYTTV GELIAWIIGW DMILEMLMAG
SVIAKYWGVY LNDLMKLFGL NMTTSFNLGG FTIDVAPIII VAFFTTMLVL GTKLSARFDG
ALTILKIGIV LFVVVVGFFY IKASNFTPFV PPATDAASVK GIEVSGVMAQ PLWQWVTGMQ
PAVYGVPGIL SGAALVFFAF IGFDVVATTA EETKDPHKNI PRGIGLGLFI VTVLYILVAV
VTTGMVSYKD LAKQAAPSLS TSFELVGATW AAKIISLGIV IGLTTVVMVL LLGLTRIIFA
VSRDGLLPRS FSKVSKRGIP ARLQIVAGIV VAVVASTLDI GILSDMVNIG TLSAFLLVSA
GVPIMRMRRP DLHRSFSVPG NPWLPLFAAL STFWLMLNLS VLTWIRFAVW LAIGFAVYFG
YSYRNSLLGR QLRKAKQLGV PVETLFAQDA AAAEKVAEGE TEEQARAEAQ AEVTAAASQD
SQN
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