Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0110 |
Symbol | rho |
ID | 8709503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 130733 |
End bp | 132703 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646482231 |
Product | transcription termination factor Rho |
Protein accession | YP_003373377 |
Protein GI | 283782623 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCAACAG GCCAGAATCT TGAAAAAATG AAGCTTTCAG AATTGAAAGA TCTTGCGAAA CAAATGGGTT TGCGTGGTAC ATCTACAATG CGTAAGCCTG AGTTGGTGGC TACACTGACG GCTGCTCGTA ATGGGGGAGA AGCGCCTGCA GGTGTAAGTG TGCGTGTTCC TCGTGATGTT GTGAATGCTA ATAAAACTGC AGATACTAGT ACGGATATAG AAGATGTTAG GTCATCGAAA GACAATAGTG ATTTAGAAGC GTTAGAAGTT TTGGTTCCCA ATGCTGCTTC AGATCGTCGA TATAGAGACG AAGAAGATTT TGGGAATAAA AATTATCGAC GCGATGCGAA TCGTAATAAT ACATTCCAGC GTCGTCGTTC CTCAGAAGAT CGTAATGATA ATCGCGATCG TAGAGAAGAT GGGATGGATT CGCATGAGTT GGATCAAATT TTGGCAACAT TACCTGGTGA AGATTCTCAC GCAGAGGGTG AGCAGCGTCG TCAGCGTGTA GCTTCTCGTG ACTTTGATAG AGAAGAACAG CAAAATCGTG CTGATCGTTT CCAGCGTCGT ATGCGCGGTC GTGCGCGTGA TTACGATGAG TCTCGTTCAG ATTATTCAGA TCGACAGAAT CGTTCAGAAC GCATGGATCG AGTAGAACGT GACGATCGTG ATGAACGTCG TGCTGAGCGT GGAGAACGTC AAGATCGTAA TGATCGCAAT GTTCGTCTTG ATCGCGATGC GCGTGATGCA CGTGACTCTC GTGAAGAACA TGATTTACGC GAGATTCGCC GTGAAGAGCC TCAGGAAGAG CTCGTACCAG TAGCCGGAAT TGTTGATGTC TTAGAATCTT ACGCATTTGT GCGCACTTCT GGTTATTTGC CTGGTCCTAA CGATGTGTAT GTTTCAATGA GCCAAATTAA AAAATATGGT TTACGCAAGG GTGATGCAGT TCAAGGCTCC ATTCGTGCTC CTCGCGAGGG TGATCGCAGG AATCAGCGTC AGAAGTTTGT TCCGTTGCAA ACTGTTAATA GCATTAATGG CATGAGCGTT GAAGAAGCTC AGTCTCGACC GCAATTTGCT AAGTTGACGC CGTTATATCC GCAGGAGCGT TTAAAGCAAG AAACTACTCC TAATCGCATG TTGGGACGTG TCATTGATTT AGTTGCCCCA ATTGGTAAAG GTCAGCGCGG TTTGATTGTG TCGCCACCAA AGGCTGGTAA AACTATTACT CTTCAGAATA TTGCAAATGC AATTACTACA AATAATCCTG AAGTGCATCT TATGGTTGTG CTTGTCGATG AGCGTCCAGA AGAAGTTACC GATATGGAAC GCACTGTGCA AGGCGAAGTG ATTTCTTCTA CATTCGATCG TCCTGCAACG GATCACACTA CTGTTGCTGA GCTTGCTATT GAGCGTGCTA AGCGTTTGGT TGAGCTTGGT CAGGATGTTG TGGTTTTGCT TGATTCTATG ACTCGTTTAG CTAGAGCCTA CAATATTGCT GCTCCTACTT CTGGTCGTAT TCTTTCCGGT GGTGTTGATG CTCAGGCGTT GTACCCACCA AAGAAGTTCT TCGGTGCTGC TCGAAATATT GAAGATGGCG GCTCTTTGAC TATTATTTCT TCTGCATTGG TTGAAACCGG CTCTAAGATG GATGAAGTAA TCTTCGAAGA GTTTAAGGGC ACTGGAAATA TGGAATTGCG CTTGAGTAGA GATTTGGCTG ATAAGCGTCT CTTCCCAGCA GTAGATATTA ATGCCTCTGG AACTCGTCGT GAGGAGTTAA TTACTCCAGC TGCAGATTTG CCAGTTATTT ATCGTTTGCG CCGTCTCTTT GGTGGTCTTG AGGCAGAGCA AGCGTATCAG ACTTTGATTC CTCGATTGAA GAAAACTGCT TCAAACCGTG ATTTCTTAGC TGCTATAACT CAACAAACTG GCACTGCTAC GAATAATTCT TCTTCTACGA CTATTGCGTA G
|
Protein sequence | MATGQNLEKM KLSELKDLAK QMGLRGTSTM RKPELVATLT AARNGGEAPA GVSVRVPRDV VNANKTADTS TDIEDVRSSK DNSDLEALEV LVPNAASDRR YRDEEDFGNK NYRRDANRNN TFQRRRSSED RNDNRDRRED GMDSHELDQI LATLPGEDSH AEGEQRRQRV ASRDFDREEQ QNRADRFQRR MRGRARDYDE SRSDYSDRQN RSERMDRVER DDRDERRAER GERQDRNDRN VRLDRDARDA RDSREEHDLR EIRREEPQEE LVPVAGIVDV LESYAFVRTS GYLPGPNDVY VSMSQIKKYG LRKGDAVQGS IRAPREGDRR NQRQKFVPLQ TVNSINGMSV EEAQSRPQFA KLTPLYPQER LKQETTPNRM LGRVIDLVAP IGKGQRGLIV SPPKAGKTIT LQNIANAITT NNPEVHLMVV LVDERPEEVT DMERTVQGEV ISSTFDRPAT DHTTVAELAI ERAKRLVELG QDVVVLLDSM TRLARAYNIA APTSGRILSG GVDAQALYPP KKFFGAARNI EDGGSLTIIS SALVETGSKM DEVIFEEFKG TGNMELRLSR DLADKRLFPA VDINASGTRR EELITPAADL PVIYRLRRLF GGLEAEQAYQ TLIPRLKKTA SNRDFLAAIT QQTGTATNNS SSTTIA
|
| |