Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0062 |
Symbol | ksgA |
ID | 8709666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 73420 |
End bp | 74328 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646482183 |
Product | dimethyladenosine transferase |
Protein accession | YP_003373331 |
Protein GI | 283782577 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0030] Dimethyladenosine transferase (rRNA methylation) |
TIGRFAM ID | [TIGR00755] dimethyladenosine transferase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.142341 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTTACGAA ATTTGGACGG TAAAACTTTG ACAGAAATCA GCATTGAAAA TGAAGGTCAG CTTTTAGGTG CAGCAGATAT TAGACGTATT GCTGCCGAGG AAGGCATTAC TCCTACCAAA AAGTTTGGTC AAAATTTCGT TATTGATCCT GGTACAGTGC GAAAAATAGT AGCGGCAGCT GAAGTTAAAT CTGGCGATAT CGTTATGGAA GTAGGGCCTG GTCTTGGTTC TCTTACTCTT GCAATATTGC AAACAGGAGC ACAGCTTACT GCAGTAGAAA TAGACCCTCC GCTAGCTCGA CGATTGCCGC ATACTGTAGA AGAATTTATG CCTCAATCAA TGCAAAAATT TAACGTCATT CTAAAAGACG CTTTGACAGT AAATGCCGAT GATGTTCCAC AGATTGCGCA GGCTAAACAA TTTACTCTTG TTGCAAACCT GCCATACAAC GTTGCGACGC CTATTATTCT TACTTTGCTA GAAAAATTTA GTAACTTACA GAATTTTCTA GTTATGGTTC AAAAAGAGGT AGCAGATCGT TTATGCGCAC AACCTGGGAA TAAAGTATAT GGCACACCAA GTGTTAAGTT GGCGTGGTAC GGCAAAGCCC AACGCGCAGG GCTTATCGGT CGTAATGTAT TTTGGCCATC GCCAAACGTT GATTCAGCAT TAGTTTCTTT TACTCGCAAT TGCACAGGTA AAGGTGACAA TAATGAACGT GAGGGAGTAT TCGCTTTCAT TGATGCCGCC TTCCAGCAAC GACGTAAGAC ATTGCACGCA GCTCTTAAAA ATCAAGTTCC AGAAGAAGCA TATAAAAATT CTGGAATTGA CCCAACTAGA CGCGGCGAGA CGCTTACTTG CGATGAATTT ATTGCTTTAT ATCGCGCATG CAAAGATTGT AAATTATAA
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Protein sequence | MLRNLDGKTL TEISIENEGQ LLGAADIRRI AAEEGITPTK KFGQNFVIDP GTVRKIVAAA EVKSGDIVME VGPGLGSLTL AILQTGAQLT AVEIDPPLAR RLPHTVEEFM PQSMQKFNVI LKDALTVNAD DVPQIAQAKQ FTLVANLPYN VATPIILTLL EKFSNLQNFL VMVQKEVADR LCAQPGNKVY GTPSVKLAWY GKAQRAGLIG RNVFWPSPNV DSALVSFTRN CTGKGDNNER EGVFAFIDAA FQQRRKTLHA ALKNQVPEEA YKNSGIDPTR RGETLTCDEF IALYRACKDC KL
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