| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0056 |
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| Symbol | |
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| ID | 8709909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 66150 |
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| End bp | 67946 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646482179 |
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| Product | putative integral membrane protein MviN |
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| Protein accession | YP_003373327 |
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| Protein GI | 283782573 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
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| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAG TAGGTCGAAA TTCTGTAATT ATGGCTAGCG GAACAGCCGC ATCACGCATT
ACAGGTCAAA TACGTACTAT CTTATTAGCA GCAGCCCTTG GAACAACAGG TTTAGCAGCA
AACGCATATC AAGCTGGATC TATGATTCCA CAGCTAATAT ATACGCTTGT TTCAGGTGGA
ATTTTCAACG CTGTATTAGT ACCGCAAATT GTTCGCACTC TCGAAAAGAA AAATGCCGAG
GAACGCTTAA ATAAACTTAT TACATTTGCA ATTCTTCTGC TTCTCGCGCT AACAGTTCTT
ATGTCTATAG CAACGCCTGT GCTCACTATG CTATACGCCG GCGGAAGCGC CGAAATGCAA
ACATTAACTT GTTCATTTAC TTTATGGTGC ATGCCTCAAA TTTTCTTTTA CGGTATTTAT
ACAGTACTTG GGCAAGTTTT GGCGGCAAAA GAGCATTTTG CCATGTACGC GTGGAGTTCA
GTTGCAGCAA ATATTATTAG TTGCCTAGGC TTTGGCGTTT TTATCATCAT CTTTGGTAAA
GCAAATAGGA TGCCACTAAG TTTTTGGAAT GGCAATACTC TTTTGCTCAC TGCAGGATTC
TGGACTATCG GCGTAGCAGC ACAAGCTTTA GTGTTATTCC TACCTCTTAT AAAATGCGGA
ATACACTACA AGCCAAGTTT TGGTATACGA GATATCGGTT TAAGATCAAT GGGCCCTGTT
GCTGCATGGA GCATGGGCAT TGTTATTGTT ACACAAATAG TTGTAATGAT TACTACGCAT
ATAACAACAA GCGTCCCATT TGTTGCTGAA AAACGTTTAG GCTTAGACCA GTTTGAAGTA
GCAGGTAATG CTACTTATCA AAACGCTTAC ACAATGTTCC TATTGCCATA CTCTTTAGTT
GCAGTATCCG TTGCAACAGC AATTTTCCCT AAAATTTCAC GCTCTATTGC ATCTCACGAT
TTACATAGCG CGCGCAATGA CTTAAGTGAA GCTTTAAGGC ATGTAAGCAT AATTATGTGC
TTCTTTACAG TCGTTTTTAT TGTTATTCCA ACACCTATTT CGTTAGCTTT AATACCATCA
ATAAGCGTTC AAGAAGCAAA CCTTATGTCT GCACCTTTAA TGATGCTAGC TTTTGGCTTG
CCTTTAACTA GTAGCTATTT GATTATTCAA CGCACATTCT TTGCTTTTGA AGACGGTAAA
AGTCCTTTTA TTTTCGCAGC AGCGCAACTT CTTACTGAGC TTTTTGCCTT TGTATGTTGC
ATTAATGTAC TGCCACCTAC TTATTGGGTT ACAGCTTTAG GCTCATCAGT TTCAATAAGC
TACTTCTTGA CTTTCCCATC ACTTGTTCAT ATGCTTCGAA ATCGTTTCAA CAATGACTTA
GATGATCGAA ATCTTATAAT TACGCATATA AAAATTATTA TTGCTTCAAT AGTATCTATT
GTTGTTGGTT TCTTAGTAAG TAAACCGCTA TTGCATGTTT TAAACTTCAA TTCCCCACAT
ATGCATGGAG TATTAAGGTG GGTATACGCA ATACTTATTT GCGCAATAAC AACAATTATT
ATTGCTGTTG TGTATCTGTC AGCACTCTTA CTTTTGAGGA CCAGAGAACT TGTAGATTTG
TCTTCTCCAA TAATTAGTAA GCTTGCCCAA AAGATTCCTG CTCTTGTTCC TCTTGCTAAA
ATTTTTGAAG AAACTGCAAA AAGTCAATCA CAACACGAAC AGAAAAATCT TAGAATTCCG
CGTAGAATAC AATCCGATGC AAAATATCAT GATTCTTCTA ACGGCAAAAA CTTCTAA
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| Protein sequence | MSSVGRNSVI MASGTAASRI TGQIRTILLA AALGTTGLAA NAYQAGSMIP QLIYTLVSGG
IFNAVLVPQI VRTLEKKNAE ERLNKLITFA ILLLLALTVL MSIATPVLTM LYAGGSAEMQ
TLTCSFTLWC MPQIFFYGIY TVLGQVLAAK EHFAMYAWSS VAANIISCLG FGVFIIIFGK
ANRMPLSFWN GNTLLLTAGF WTIGVAAQAL VLFLPLIKCG IHYKPSFGIR DIGLRSMGPV
AAWSMGIVIV TQIVVMITTH ITTSVPFVAE KRLGLDQFEV AGNATYQNAY TMFLLPYSLV
AVSVATAIFP KISRSIASHD LHSARNDLSE ALRHVSIIMC FFTVVFIVIP TPISLALIPS
ISVQEANLMS APLMMLAFGL PLTSSYLIIQ RTFFAFEDGK SPFIFAAAQL LTELFAFVCC
INVLPPTYWV TALGSSVSIS YFLTFPSLVH MLRNRFNNDL DDRNLIITHI KIIIASIVSI
VVGFLVSKPL LHVLNFNSPH MHGVLRWVYA ILICAITTII IAVVYLSALL LLRTRELVDL
SSPIISKLAQ KIPALVPLAK IFEETAKSQS QHEQKNLRIP RRIQSDAKYH DSSNGKNF
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