Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0038 |
Symbol | mscL |
ID | 8709265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 44177 |
End bp | 44587 |
Gene Length | 411 bp |
Protein Length | 136 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 646482161 |
Product | large conductance mechanosensitive channel protein |
Protein accession | YP_003373309 |
Protein GI | 283782555 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1970] Large-conductance mechanosensitive channel |
TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGATAAAAG GATTTAAAAA ATTTATTTTA CGAGGCAGCG TAATCGACAT GGCTGTCGGT GTTGTTATGG GTAGTGCAGT AACTTCAGTA GTAACAACGA TAGTTAATTA TATTATTAAT CCTCTTATTG CAATGATTTT TGGAAAGCCA GAACTTAATG GTGTTCTAAC TATTAGTATG AATGGTGCAA CAATTTCTTT TGGCGCAGTA ATTGGAGCAT TATTGAATTT CCTTATTGTT GCTACAGCAG TTTATTTCTG CATTGTTTTA CCTATTAATA AATTGCGTGA AATTGGTGCA GATTTGTTGC AAATTGAACA TGAAAAAACT GAAGAAGAAA AAAGAAAAGA GCGTGAAGAA AAAACTATTC AACTGTTACA AGATATTCGT GACGAACTAG TAAAACGTTA A
|
Protein sequence | MIKGFKKFIL RGSVIDMAVG VVMGSAVTSV VTTIVNYIIN PLIAMIFGKP ELNGVLTISM NGATISFGAV IGALLNFLIV ATAVYFCIVL PINKLREIGA DLLQIEHEKT EEEKRKEREE KTIQLLQDIR DELVKR
|
| |