| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0029 |
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| Symbol | |
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| ID | 8709153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 32916 |
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| End bp | 34022 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482152 |
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| Product | sortase family protein |
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| Protein accession | YP_003373300 |
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| Protein GI | 283782546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCTG CTAATATGCA GGAAGGAAAA ACGAAGCGTA GCAGCTCGAA TTTCTGGTGG
CAAGCCGCTG GAATTATTGG CGAACTGTTG ATAGCTTTTG CAGTTATTTG CGCATTGTAC
ATTGCATGGC AAATGTGGTG GACTGGAGAG CAGGCTGAGC ACACTCAAGT AGAGGCACGT
CAAGCAATAT CTTGGCAAAA CCCAAAAACT GGTGATAAAA CGAAGATTGC TTTACCACAG
AATACTGACC CACCTGCTTT AAGCAAACCA AAGTCTGAAG ACCTTGTAGC TCGTTTATAC
ATACCACGTT TTGGAAATCA GTGGGAACGA AATGTTGTAG AAGGCATTAC GCCAGACATC
TTAAGCAAGC GTGGTTTAGG TCATTATCCA ACCACACAAA TGCCTGGTGC AATAGGTAAT
TTTGCAGTAG CAGGTCACCG AAATGGTTAT GGTCAGCCAT TGGGAGATGT AGACTTACTG
AAGCCTGGCG ACGCAATAGT AGTTCGCACA AAGGATTATT GGTTCGTCTA TAAGTACACT
TCTTACAAGA TTGTTACACC AGATCACGGT GAAGTTATTG ATGCAAATCC TGATCATCCT
GGTGAGAAAC CAACAAAACG TATGCTTACT CTTACAACGT GCGAACCTAA GTATACTGCT
GCAACTCATC GCTGGATTAG CTACGCAAAA TTCGCTTATT GGGCAAAGAT TAGCGATGGC
ATTCCAAAAG AACTTTCTAC TATTGATGAG CAAGGAAAAG TGAAGTTTAT TAACAATGAG
CAACAATCTC TAGTTTCTCG TCTTTCTTCA CTAGTGCCAG TTATGGTGGT TGTTTTATTA
GTGTATATGA TGATTTTCGT AGCAGGAGCA ATTGCTTGGC AATGGCCAGA ACTTCGCGCT
ATTCATTCTG GATTAAAGAA AAAGCCTGAT GCAAGCATTT TTGGCGGTCT TTTGCGCATA
CAACCAGGTA TTACAGCGAT TCGTTGGATT CTTTCGATTC TGATTTATTT CTTCATTGTA
TTAGCATTAT TCCAGTGGAT TTTCCCTTGG GGCGCATCTA CAATTCCATT CCTTCAGCAG
ATGTCTAATT ACTCAACAAC TGTATGA
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| Protein sequence | MQSANMQEGK TKRSSSNFWW QAAGIIGELL IAFAVICALY IAWQMWWTGE QAEHTQVEAR
QAISWQNPKT GDKTKIALPQ NTDPPALSKP KSEDLVARLY IPRFGNQWER NVVEGITPDI
LSKRGLGHYP TTQMPGAIGN FAVAGHRNGY GQPLGDVDLL KPGDAIVVRT KDYWFVYKYT
SYKIVTPDHG EVIDANPDHP GEKPTKRMLT LTTCEPKYTA ATHRWISYAK FAYWAKISDG
IPKELSTIDE QGKVKFINNE QQSLVSRLSS LVPVMVVVLL VYMMIFVAGA IAWQWPELRA
IHSGLKKKPD ASIFGGLLRI QPGITAIRWI LSILIYFFIV LALFQWIFPW GASTIPFLQQ
MSNYSTTV
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