| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_3308 |
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| Symbol | |
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| ID | 5162754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter uraniireducens Rf4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009483 |
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| Strand | - |
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| Start bp | 3888102 |
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| End bp | 3889913 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640550794 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001232038 |
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| Protein GI | 148265332 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG4564] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000660005 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGTGA AAAGATTCAG ACATTGGGCC ATCCTGCCTA AAATCATGAC CATCTCGGTT
GTAAGTGTTG CCGTCATTGC CGGTGTGGTG ATGTTTTACT TTCTCCCGCT CGTTGAACGG
AAGATTATGG ATGGGAAGAA GGAGGGAACG AAGTATGTCG TTGAGGTGGC ATTCGGCATA
CTGGCCGGAT ACGATGCCCT GGCAAAATCG GGCCAGCTCA CCGAGGCGGA TGCCCGGCAG
AGGGCTGCGC TGGAGGTCAA GAAACTCCGC TACAAAGAAA CGGAATATTT CTGGATCAAC
GATCGTGCCT CGAACATGGT CATGCATCCC ACCAGGCCGG AACTGGACGG GACGAACCTG
AGCGACAACA GGGACCCGCG GGGAACCTTC GTCTTTAAGG AATTCGTCCG GGTCTGCAAT
GAAAAGGGGG CGGGGTTCGT GGAGTACCTC TGGCCGAAGC CGGGCGAGCG GCTGCCCGTT
GCAAAAATTT CCTATGTGAA GCTCTATGCC CCGTGGGGAT GGATTGTCGG CAGCGGCATC
TACGTGGATG ATGTGGAGAA GGACATGGCA AGACTCCGCT GGAACATGGC CATTGGGACC
ATGGTGTTCG CCGCTCTGAT TTTGTCCCTC AGCCTCTTCA TCGGCATCAG CATAACCAGG
CTTTTGAAAA ACGTCATCGG CGGTCTGCAG GATATCGCCA GCGGCAAAGG GGATGTTGAC
CTGAGTAAAA GGATCGCCAC CTCGTCCATC GATGAGATCG GCGTCCTTTC CTCCGAATTT
AACGGCCTGA TGGACTCGAT CAGCAGTCTT ACCATCTTTA AAAAGGTCAT TGAAGAGGAC
GACACCCTGG ACGATGTCTA TTTCAGGCTC GGCAGCGTGT TCACTGAAGA TCTGGGGTTG
GGCGGCTGCG TGATATACGA GATTTCAGGC AGTCAGGGCA AGATGCGGCC GGTATATCCA
TCGTTTGTGG CAACCGGCGA ACTTTACTGC AACGCGGATA TCCTCGACAA CCACGATCTT
TGCAAGGCAA AGAGGACCGG TCATCCGATT TCATCGCTCA CCTATCCGCG CATTTGCAAG
CAATTTTCCG TCGCGTCCGG CAAGGAGCAT TTCTGCATTC CCATGACGGT CGGCGGGGGA
ACTGTGGGGG TGGTGCAGTT TGCGTTCGAC AAATCCGATA CGTTTACGGA TTCGAAGGAA
AACGAGCGGA GGTTGTTCAA GGCTGAACAG TACATCAAGG AGTCCCTGTC GGTCATCGAG
GCCAAAAGGC TCATGAATAC CCTGCGGGAA TCGTCGCTCA AGGACCCGTT GACCGGACTT
CATAACCGGC GTTTCCTTCA GGAATACACG GAGAAGCTGG TTGCCGGGGC CAAGAGACGG
AGAACCCTTG TCGGCCTTAT CATGTGTGAT CTGGATTATT TCAAGCAGGT GAACGATGCC
TATGGGCATA ATGTCGGGGA CATCGTCCTC AGGGAAACCG CGAGCATCAT CAGGACCAGC
GTGCGGGAAG CAGACATTGT CGTCAGGTTC GGCGGAGAAG AATTCCTCGT TGTTCTCTTC
GATATCGGGG CGGGTGATGC TCTTAACGTG GCAGAGAAAA TCAGGGTGAA CGTGCAGAAT
GCCAGGATAA AAATCCCGGA AGGGGTCATT CAAAAAACCA TCAGTCTCGG CGTCAGCGAA
TTTCCAGCCG ATAGCGAAAC TTTCTGGCAC TCGATCAAAT ATGCCGATGT TGCCCTCTAC
AAGGCAAAGG AGGCGGGGAG AAACAAGGTC ATGCGCTTTA CCGGGGATAT GTGGACAGAC
GAACATTTTT GA
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| Protein sequence | MKVKRFRHWA ILPKIMTISV VSVAVIAGVV MFYFLPLVER KIMDGKKEGT KYVVEVAFGI
LAGYDALAKS GQLTEADARQ RAALEVKKLR YKETEYFWIN DRASNMVMHP TRPELDGTNL
SDNRDPRGTF VFKEFVRVCN EKGAGFVEYL WPKPGERLPV AKISYVKLYA PWGWIVGSGI
YVDDVEKDMA RLRWNMAIGT MVFAALILSL SLFIGISITR LLKNVIGGLQ DIASGKGDVD
LSKRIATSSI DEIGVLSSEF NGLMDSISSL TIFKKVIEED DTLDDVYFRL GSVFTEDLGL
GGCVIYEISG SQGKMRPVYP SFVATGELYC NADILDNHDL CKAKRTGHPI SSLTYPRICK
QFSVASGKEH FCIPMTVGGG TVGVVQFAFD KSDTFTDSKE NERRLFKAEQ YIKESLSVIE
AKRLMNTLRE SSLKDPLTGL HNRRFLQEYT EKLVAGAKRR RTLVGLIMCD LDYFKQVNDA
YGHNVGDIVL RETASIIRTS VREADIVVRF GGEEFLVVLF DIGAGDALNV AEKIRVNVQN
ARIKIPEGVI QKTISLGVSE FPADSETFWH SIKYADVALY KAKEAGRNKV MRFTGDMWTD
EHF
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