| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_1240 |
|---|
| Symbol | |
|---|
| ID | 5165147 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | - |
|---|
| Start bp | 1466680 |
|---|
| End bp | 1470666 |
|---|
| Gene Length | 3987 bp |
|---|
| Protein Length | 1328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640548744 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_001230017 |
|---|
| Protein GI | 148263311 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCCCA TCCGTTGTGC TGGCAATTCC CTGCAAAACG CCGTTCTCGT TCTATGCCTG
ACGCTTTCCA TCTTCTTCAC CGTAAATGCC CATGCGGCAG ACGAGAAAGT TGTCGGCAAG
GAAGTCGCTG ACGGAACCGA CACCTCGGCA AACAGCGACA CGCCTTTACC AGACCTCTTC
ACAGGGACCA TGAGCTATCG CATTCCTATT GAAGTCCCGC CCGGCCGTAG AGGTGTAGAT
CCCGGCATAG TCCTCACCTA TCGGAGCACG AACGGCAACG GTTGGCTGGG TGTCGGCTGG
GAACTGGAAA TGGGTTCAAT AGAGCGGAGC ACCAAAGGAG GCGTGAACTA TGACGCCAGC
GACTTTCTAT TGCGCGGACC GGGCGGGGTA ACGGAATTGG TCAATCTCCC CGGCACCTCC
GAATACCGCG CCAAGATAGA AGGGAACTTC ATTCGGTTTA TAAATTATGG AACCTATTGG
GAAGCGATTG ATAAAAAGGG GGTACGCTTC CGTTTCGGTC ACGAACCCAA CACCACAGTC
TACGACCCCA ACAAGCCGGC CCACGTCTTC AAATGGTGTC TTGACCTGAT AACCGATACG
AATGGCAATT ACGTCACTCT CAACTACACC CCGGACCGGA ACCAGTTATA CTTGAACGAG
ATAGACTACA CCGGCAACGA CCCTGTCACT CATAAACTCC CCCCTACCAA TTCTGTAAAG
TTCATCCTCG AAGACCGCAA CGACGCCCCG ACAATGTACA CAACCAACTT TGCCGTCACC
ACGGCGAAGC GGCTCAAGAC CATCGAGGTT TGGTCCAACT ATAACACAGT TAACACACAA
CCCTTGCGGG TAAGAAAATA TGAACTGAAC TATGATGCCG ACTCGACGAC GACCGGCAAC
CAGTACAGTC CACTGACCAA CAGGTCGGTT CTCGGCACGG TGACAGAGTA CGGCAGTGAC
GGTACGACCA CAAAGCCGCC TATCACCCTT GGATACTCCA ACGGTTACAC CGTTGCCGGC
GGAACATCCA GCGGCGGATG GAGTCTTTCT GACCCTATCG GGGTATCTAT GCCGCTCCCT
GTCGGCATGT ACTGCATCCC CGGCAAATTC GGCAGCAGAT TCGATATCCT TTGCTCTACC
GGTAGCACCG GGTGGGACCT CAAGTATTTA TTCAACAATC TTGACGTGAA TGGGATATCT
TTGCAATGGT TACCTGACGG CAACAAGCCT ACGGATCTTT CCCAGGATTC TTTGGGACAT
CAATGCGTTA CCGGCGATTT CAATGGCGAA GGGAAAAACG CCCTTGCCTG CAATTTTGCC
AATAACGGGG ACTGGACCAT GGTTTTCCCG GGAGGAGCCG GAGAAATCTG GACTAAAGAA
ACCTGGCATA ACGCTCCAAC TGTTCTGCCC ATAACTCAAT GTTTTGGCGG TGATTTCGAC
GGCAACGGCA AGTCGGACTT TGCCTGTTAT GCCAGCAATA CCTGGAAAAT GGCGTTGTCC
ACCGGCAGCG CATGGGGCAG CAGCCCAGTC CAATGGTCCG ACGGGCCAAC TACCTTCACT
TATCCAACCA ACAACTGCCT GACCGGTGAC TTCGACGGCG ACGGCAAAAC CGACTTTGCC
TGCAACTCCG GGAACACCAG CACCTGGAAT ATGTACCTCT CCAACGGCAA CGGTTGGACG
CCTGCCACTT GGTATAGCAA CGGGATGGCT CCGGACTTCG TCAAATCAAA CTACATCCTG
AGCGGAATCT GTATGACTGG AGATTACAAC GGTGACGGCA AGACCGATAT TGCCTGTGCC
TCCGGCAGCG GTTTGTGGAA TGTTCAACTG TCAACCGGCA GCAGCTGGGA CACGGCCTCT
TTCTCGATGG GCGGCGCCAT CGTCTCCTTT CCAATCAACA CAAAATGCTT GTCCGGCGAT
TTCAATGGCG ACGGCAAAAC CGATATTTCC TGCTACACCT CCGGCGGTAT CTGGAGCACG
GCTTTATCTC TCGGAAACGG CTGGAACACC CTTTCTTGGG ACGGCGGCCC TTCTCCTGAA
ACGTCAGTCA GCCAGCAATG CTTTGCCGGA GACTATAATG CCGATGGCAA GACCGACATC
GTGTGCTATC CACATGACAC CTCTTATCCA GGTGGAGCTT TTCATTGGGA ATCGGGCTAT
GCCAACGCGC CGTTGACTGA CCTTCTTACG CACGTCTCCA ACGGCCTTGG CGGCGAAATC
AGCGTCTCCT ATTCACCCTC CTCATGGTAT GCCCAGCTTC CATTCACCAT GCAACTTATC
TCAAGCGTAT CCGTCAGTGA CGGTAACAAC AACACCTCCA CCTCGAACTA TTCCTATTCC
GGCGGCTACT ACAATTTCAG TGCAAAGGAC TTTCGCGGCT TCAACTCTGC GAAGGTAATC
GGTCCCGGAA AGAACAATGA ACTGACCGTA ACAGAAACAT GGTTTCACCA AGGGGATGAT
ACCGCTGTAG ACGTGAACAA CCCATCGGCG ACCGTTGGGT TCATGAAAGG GAAACCTTAC
AGGACACGGA TATCTGACGG TCAGGGTAAA GTATATTCCG AAACTGAGAC ATCATACTCG
ACTTACACGT CAACCCCTTA CAACTACAGT CCAGCCACCA AGGTAGACAC CTACATCTGT
GATGGGCAAG CATACGGGCA GTGCAGGGAT AGTGGTAGCG CTCGACAGAC ACGAACCGTC
TACTACTACG ATGATTACCT TACCTCACCT CATGCAAATT ACGGCAATGT GACCCGCGAA
GATCGTTATG GTGACATCAT GAATCCTGCT AATGTCTCCC TGAACATGAC CATCGAGAGG
CAGTTTTCAC CAAATGTTAC CAACTGGATA GTATCTTTAC CAGCCACTGT TAGCGTTTTC
CAAGGCATAG GCGATACAAA TATCGGTACC AACCTGAAGG TCAGCCAGAC GGATTATTAT
TACGATGACT TCCCTCTTGC CAATTGCTCT GCCGCCTCCC AATACAATCA TACTCCAACT
AATGGGAACC TAACCGTCGT ATCCCGCTGG CTCAATGGTG GCAACAACTC TGAAACCCGG
ACGGCTTATG ACGGCTACGG CAATCCGGTA TGCACCCGCG ACCCTAACGG CAACGTAACC
ACAACAGGTT TTGACACCAT CTATCAAACT TTCCCTGTCT CAAGCACCAA TGCCAAGACC
CAGACGACGA CCTCCGCCTA TTATGGCGTC GGCATAGCCG CCGACAATGG ACGCTTTGGC
CAACTGAAGA GTATTTCCGA CCCCAACAAC GCGACCATAA CGGCGGTGTA CGATGTATTC
GGCAGAAAGA CAAAGGATAT TCAGCCGGAC CTGTTCTCGA CGAGTACTGC TTATAACTCC
TTCGGTACGG TCGGCAGTCA AAACGTTTAT ACCTATAATC AGTTGGGCAT GTGGTCCGCC
TCCTATTTCG ACGGCTTGGG ACGGACATTC AAGGTACGGA AAAGCGGGCC TGACAACAAG
GTTATCGTCA CCGAAACGGT ATATGACCAA AGAGGAAAGG TGAACAGTGT TTCAGCCCCT
TATTTTGAGG GCGTTGAAAC GCCGGTTTAC CGGACTTACA CCTATGACCC GATGGGAAGA
GTGACGAGAA CAACCAACCC GGACAACACG TTCACACTGG CCTGCTACAA CGACCTCGTG
AGCGTCTTCA TAGACGAAAA CGGCCACCGC AGGCGTGAAA CGCGGGATGC ACTGGGACGT
CTTGTTACAG TGGAAGAGTA CACGGGGACC TCCACGACAT GCGACACAAC TCAGAATCCA
AGCCAGTTCA CACTTTACGC TACTACCACC TATACTTACG ACGTTCTTGG AAATCTTACG
GATGTAATCG ATGCCAACCA GATGGGCGTG CCCGTCGCCA ATCAGAAAAA AACGCACATT
GAGTACGACA CCTTGGGGCG GAAAAAGAAC ATGACCGACC CGGACATGGG GTATTGGGAA
TACAGCTATC CCCCTGTGTC AGAATAG
|
|---|
| Protein sequence | MIPIRCAGNS LQNAVLVLCL TLSIFFTVNA HAADEKVVGK EVADGTDTSA NSDTPLPDLF
TGTMSYRIPI EVPPGRRGVD PGIVLTYRST NGNGWLGVGW ELEMGSIERS TKGGVNYDAS
DFLLRGPGGV TELVNLPGTS EYRAKIEGNF IRFINYGTYW EAIDKKGVRF RFGHEPNTTV
YDPNKPAHVF KWCLDLITDT NGNYVTLNYT PDRNQLYLNE IDYTGNDPVT HKLPPTNSVK
FILEDRNDAP TMYTTNFAVT TAKRLKTIEV WSNYNTVNTQ PLRVRKYELN YDADSTTTGN
QYSPLTNRSV LGTVTEYGSD GTTTKPPITL GYSNGYTVAG GTSSGGWSLS DPIGVSMPLP
VGMYCIPGKF GSRFDILCST GSTGWDLKYL FNNLDVNGIS LQWLPDGNKP TDLSQDSLGH
QCVTGDFNGE GKNALACNFA NNGDWTMVFP GGAGEIWTKE TWHNAPTVLP ITQCFGGDFD
GNGKSDFACY ASNTWKMALS TGSAWGSSPV QWSDGPTTFT YPTNNCLTGD FDGDGKTDFA
CNSGNTSTWN MYLSNGNGWT PATWYSNGMA PDFVKSNYIL SGICMTGDYN GDGKTDIACA
SGSGLWNVQL STGSSWDTAS FSMGGAIVSF PINTKCLSGD FNGDGKTDIS CYTSGGIWST
ALSLGNGWNT LSWDGGPSPE TSVSQQCFAG DYNADGKTDI VCYPHDTSYP GGAFHWESGY
ANAPLTDLLT HVSNGLGGEI SVSYSPSSWY AQLPFTMQLI SSVSVSDGNN NTSTSNYSYS
GGYYNFSAKD FRGFNSAKVI GPGKNNELTV TETWFHQGDD TAVDVNNPSA TVGFMKGKPY
RTRISDGQGK VYSETETSYS TYTSTPYNYS PATKVDTYIC DGQAYGQCRD SGSARQTRTV
YYYDDYLTSP HANYGNVTRE DRYGDIMNPA NVSLNMTIER QFSPNVTNWI VSLPATVSVF
QGIGDTNIGT NLKVSQTDYY YDDFPLANCS AASQYNHTPT NGNLTVVSRW LNGGNNSETR
TAYDGYGNPV CTRDPNGNVT TTGFDTIYQT FPVSSTNAKT QTTTSAYYGV GIAADNGRFG
QLKSISDPNN ATITAVYDVF GRKTKDIQPD LFSTSTAYNS FGTVGSQNVY TYNQLGMWSA
SYFDGLGRTF KVRKSGPDNK VIVTETVYDQ RGKVNSVSAP YFEGVETPVY RTYTYDPMGR
VTRTTNPDNT FTLACYNDLV SVFIDENGHR RRETRDALGR LVTVEEYTGT STTCDTTQNP
SQFTLYATTT YTYDVLGNLT DVIDANQMGV PVANQKKTHI EYDTLGRKKN MTDPDMGYWE
YSYPPVSE
|
|---|
| |