| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gura_0070 |
|---|
| Symbol | |
|---|
| ID | 5163319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter uraniireducens Rf4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009483 |
|---|
| Strand | + |
|---|
| Start bp | 86378 |
|---|
| End bp | 92233 |
|---|
| Gene Length | 5856 bp |
|---|
| Protein Length | 1951 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640547568 |
|---|
| Product | APHP domain-containing protein |
|---|
| Protein accession | YP_001228859 |
|---|
| Protein GI | 148262153 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAATG AAAGCCCCTA TTCAAAAGAG GTTTTCGCTG TTCCAAGTGA CACCCTGCCG
CCTGATAAAC CGATCCTCCA TTATCCATCC GTTACAGGGA TCCCGGCTGT TGTCTATGAC
GGACTGGCCG ATGTCGCAGG CTTTACCGAA CCGGGTGCCA ATGTCTTTAT TTTCAAGGAA
GGTGAAAAGG TTGGTGAGGC AGTCGCTCTT GCTTCGCACT TGGTAGAGAG CAAATCCTTT
TCTTTCTCCG GGAGTGACAT AGCTTTTTCA CTTGATGGAA CATCGGCAGC GTACACTTTA
TTCAACAACG TGTACGAGAA AAACTTGTCA ACAGGTGTTG AGACTCTATT GGCAGAAAGT
GCACGTAATC CCGTTTGGAA TGCGGCTGGC GACAAAATAG CCATGCAGTT TTACGATTCA
AGGGGGAATG ACCGGATCGC TGTCTTTGAC GTGCATACGG TAAAAATGAC ACCGTTGACA
GCAGGTCTGT ATGTCTATGA ACAGACCCCC GCATGGTCGG CAGATGGGAC AAAGGTGATT
TTCACCAGCA ACAAAAATGG CTATCAGGAA ATCTGGTCAA AGGACCTCAT TTCTGGTGCG
GAAACACAGG TAACACATGG TGTTTTTGCC TACAATCCGA AACCGTCCCA GGATGGAAGC
AGAATCGCAT TCTTCGATGG TTCTACACTG AAGGTAATTG ATTTACAAAC TGCTGTGACA
ACTCTGGTAG GAACTGCCAA TCAAAATACC CATAACTGGT CTGCTGATGG GAAAAGGATC
TCGTTCAGGG CAAATAAAGG AACAGGTTAC AGCATCTTCA GCTACGATTT GATGACAGGC
CAAACGAGCG AAGTTGCTGC TTCGGTGCAC TACTCTATTA TTCCAAGTTG GTCTCCTGAC
GGTAGTGAAA TACTATTCGC GAAGGCTGAA CCTGGTGGGG GGTACGCCCT GCTTGCCTCT
ACTCTGACCG GAGAATCTCG GCTGGTTAAG AAAGTAACGG GGAACATCAC CTATGCCAAC
TGGGAGAAGG ATGGAAGGAT ATGGTGTCTA GAATATGGTA CTTTGCATTC GGCCTATCTT
GCCGGGCATT TCGCCCTAAA GGGCATCCGG CTTGATCAGG GAGAAAACAC TTTCAGTTCA
GTTGCAGTGG ATGCAGCCGG AAATGCAAGT CAAGTTTCAG AGGAGATCAC AGTCAGATAT
GATACTGCTT TCCTTCCTGA CGTAGTCCCT GTGAACTTAA CCGCCTACCC AACTACCCCG
AAACCATCCG AGAATGTACT GTTGCAGGCG GCGGTCAAAA ACCTCAGCAA TGTGGCAATC
GACAATGTGG AGGCTTCCCT CTATCTGTGG GATCCGGCAG GAGATCTGAA ACTGCTGAAA
TCTGACGTTA TACCCCATAT GGAAGGGGGC GCAGAGGAAA CCATAGGGGG AAGTTTTATC
CTTGGCAGTC TCACCGGGAC CTACTCAGTG ATTGCCATTC TGGATCCTGC AGATAAGGTC
ACCGAGCTCG ACGAGACAAA CAACTACATC TCTAAGGAAA TTTATGTAAC TGACAAGGAT
GGACTAATTG TTACGGCGTC GGTCAATGTG CCTCAATATA CCGCCGGACA GGATGTCGGC
ATTACCATGG AGGTTCGCAA CAACGGTGCC GCCGCCGAGG CTGATTATGA CGGTTTCATA
GAAGACGAAG CCGGCAATAC GGTTTATACA TTCGACAGAT CGCACGTCAG TCTTTCTTAC
GGCGGGCGTC AAACCATCTC TTTAAAATGG AACACCGGCT CTACCTTCGC AGGGTGTTAT
CACGTCCATT GGAAACAGAC TACAGCCGCC ATGGAAGGGG TAGTGCCGTT TGCCATTCTG
CCTGAAATAA TAGTAACGAC AACGGCCGTT TCCGACAGAA CTGCCTATGC TCCGTTTGAC
AATGTCTCAC TCGACGTTAC CGTGCGAAAC GACGGAAGGA ACTACATCGT GCCGCAATTC
CAGGTAAAGA CAAGCATTTT TGATTCTGGA AATAAGCTTC TCTTCACCAA CGATAAGAAC
GATGTAAATT TCTTTCCTGG AACGCTTGCT TCTCATTCCG AAATATGGAG CACCGGACTT
GCACTGGCGG GAGATTACCG AGCTGTAGTC GAGACTTGGC TTGATGGAGC CATAGTATCG
ACCAAAACCG TACCTTTCAG GATAAACAGC ATCGTCCAGC TCAGAGGAAC AATCTCAACA
ACGCCTGCCG TCGTTTCGGC TGGCAACCAT GCAACTGCCG AATTTACCCT GACCAACATC
GGTAATGTCC CGGTTGATGG CCTTTTCAAA ATCAACGTGA TCGAACCGGA TGTCCAAACC
ATCGTGGAGT CTTTCGATTA CCCCATGGCC CTTGCGCTTA ATGTGTCCGG TAAAGGGAGT
ATCGATATCC CAACGGAAGG GCTGAAGCTG AAGCCCTACA TCGTCACCCT TGCCTCAACT
GGCGCAGCGG GACAAAAGAC CCTCGCCTCC GCTTCCTTCT CAGTAAAGGA TGGAATCCCG
CCGGTTCTTA CCGTTATCTC GCCGAATCAT GGAGGAATTT ATGACTCTAC CGTACAAGTT
GCCGTAATTG CCGCAGATGC TCACAGCGGC GTGGACAAGG TTGAGTTCAG CATCGACAAC
AGCACATGGT TGCCGATGGC CGTTGCCGAT CCGGCACTCG GCCGCTACAT CGGTTCATGG
CGCCAGCCGC AGGTTACCGC GACCCATGTC GTTATATTCC GCGGGATTGA CAGAGCGGGG
AATACCGCAG TTTCTGGTCC AGTTCAATTC GTCATCGATA CCGCACCACC AGAACTCCAC
GTCTCAACAT TAAGCGACGG CTCCTATACG CGAAACGAGA TCCTCAACGT TTCTGGAACC
GTCACCGATG ACACCGGCGT GAAGGAGCTT AAAATAAACA ATGAAGTTGT TGCCGTGAAC
GCGGATGGCA CCTTTAGCTA CGCCATCGTT CTCCAGAGCG GACAAAACGT CCTCACCACC
GTCACAACCG ATGTTGCAAA CCACACCACC ACTGACACCC GCACCATCTA TCTCGACCAA
AAGGCGCCGG TGATTAAGAT CATAACCCCC GCTGACAACA GTAAGACCGC ACAGCAGCAG
ATTGTGATCT CCGGGACCGT CGACGAGAAT GCAACCGTGG AGATTATGTT CAAGGGGGTC
TCCCCGCCTG TCAGCATGGA GGGGACCTCT TTCAGCGGCA GCATTACCGC CGACTACGGA
CAGAACACCA TCGAAGTCAC CGCTACCGAC TTGGCAGGAA ATCGGAGCAC CGAGAAGAGA
AGTGTCATCT TCGACGACCT GGCGCCGTCG CTTTCGATTA AGCAGCCGGC CCAAGACATA
AGGACAAATG TGCGCAGTAT CGTGATTCAG GGCACCGTCT CAGACGCCCT CACGGCAGTC
ACCCTGGCTC TTACCTACAA CGGCGAGACG TTCTATCCGG CTCTTGTCAA CGGAGTATTC
GAGCAGCCAG TGACATTTAC TGAAGAGAAG CTCCATGCCG TCACCATTAC CGCAACCGAC
GAGGTTGGCA ACACTTCAAT CGTGACCAGG AACATCATTT ACGACATAAC GCCCCCGGCG
TTAATCATAG ATCCTGTCAT AAGCCCAACG AACCAGGACA GCCAGCCCGT AAGCGGCACC
AGGGAAGAGG GGGCATCGAT TGTCGTATCC TGCGCAACGG CCACCGTTGG AGCTGTGGAA
TACCCGACCT CCACCAGCTG GCGTGCCGCA TTGGGCGGGC TGAGCGCAGG CATCAACACC
ATCAGCGTCT TTGCCTTGGA TGCCGCCACA AACCAGAGCA CGGCCACCAC CCAGATTTTC
TACGACACAA CCCCTCCAGT CGGCAGCATT GCCATCAACA ACGGAGCAGG AGCCACCGCC
TCCAGTCAGG TCACCTTGAC GCTTGCGGCA GGCGACGAGA GCGGTGTATC CAAGATGCGC
ATCAGTAACG ATGGCAACGT ATGGAGCGAT CCAGAAAATT ATGTCACAAC TCGGGGCTGG
TACCTTACCC AAGGTGACGA ACTCAAACGG GTTTACGTCT CCTATCAGGA CCTGGCCGGC
AATTGGTCTG TGCCCGTAGT CGCCGAAATT GTGCTCGACA CCACACCTCC TGCGCTCTCC
GTCTCCCCTG CGGGAGGCAT CTATAATACT GCCCGCAGTG TCATCCTCTC AGCCAATGAG
CCTTCCGTCA TCCGCTACAC TGTCGATGGC TCCACACCCG ATGCTACTTC GGTCGTCTAC
CAGACGCCGA TTCAGATAGC AGCCAGCACA ACCCTCCGCT TCTTGGCTAT CGATAACGTC
GGCAACGACA GTGAAGTGAA AACCGAAGAC TACATAATCG ACACCGTTCC GCCATCCCTC
ACTGTCTCCA CCCTGGCCGA TGGCGCCTAC ACCAACATCC AGGTACTCAA CGTTGCCGGT
TCAGCAACAG ACTCCTCCGG AATCAAGTCA CTCGTCATCA ATGGTGTCGA CATGGCGCTG
AACCAGGACG GCAGCTTCAG TCAGGCTCTG GTGCTTCAAC CAGGTCCCAA CGCCCTAACC
GTCGTCGTCA CGGACCTGGC GGGCAACAAC AGCACCGATG TCCGTATCAT CAACCTGGAC
ATGACCGCGC CGTTGCTCAC AATCATCGCT CCGGCCGACA ACGCCAAGAC CGCGTCGGCC
ATCATGAGCG TCACCGGGAC AGTCAACGAG ACCTCGACCG TCACGGTCAA ACTGGGGGCA
TCCGTCCAGC AGGCCGCCAT GGACGGCACC GGATTCAGCG CCTCGGTCAG CCTGATCCCC
GGCATCAACA CCATCGAAGT CACCGCAACC GATCTGGCCG GCAACACCAG CAGCCAGAAG
CGGACGGTGA TCTACGACGA CCAGAAGCCG TCCCTGGCCG TCATCGATCC GCCCCAGGAT
ATCCGCACCA ACCAGTCCGG TTTGATCCTC ATGGGTACTG CCTCCGATCC CTACACCCAG
GTCGGCGTCA CCATAACCAT GGACGGGCAG AGCTACACGC CCCAGCTGGT CAACGACAGC
TTCCAGCAGG CGCTCACCTT CACCCAGGAA AAGAGCTATG CCATCGTGGT TACCGCCGCC
AACGAGGTGG GGAGCAGCAC CACGACCCAA CGCAACGTCA TCTACGACAC CACCCCGCCG
GCCCTGGCCA TCAACCCGGT GCAAAGCCCG ATCACAGCCA GTTCCGTACT GCTCAGCGGC
ACCAGGGAAA CCGACCTCAC GGTCACCGTC GCCTGCCCAA CCGCGACGGT AGGCACGATC
ATCTACCCCA CACCCACTAC CTGGCAGATA CAGGTGAGCG GCATGTCGCT GGGCGAGCAT
ATCGTCACTG CAGAGTCCAC CGATACCGCC AACAACACCT CTATCGTATC GGTCAGGATC
GTGGTGCAGC AATCTGGAGC GGACATTGTC CTGACGCCGT CTCCAACGAT CATTTGGCCA
CCCAATCACA AAATGGTGCC GGTTACCATC AACGGCGTGC TGAACGTGCC CCCTGCCGAT
CTCAAATCGC TGAATATCAC CCTGACCGAT GAATACGGCG AGTACAACTT CACGAAACTC
ACTTTGGGGA GCATCGTGCT TCTGGAGGCT TGGCGAAACG GCAACGACAT GGATGGAAGG
AAATACACCT TCACCGCTGT TTTAACGCGA AAAGATGGCA GCAAAACATT TGCAAGCGCA
GTTGTGTTGG TTCCCCATGA CATGTCGAGT GACGGGAACT GCGGCGACAA GGGTGATGAC
AAAGATGACA AAGATGACAA GGATGACAAG GATGATGATC ACCACCAAGA TGACGATCAT
AAGGGAGAAA TAGATAAGAA CGACAGGGGC AGGTAA
|
|---|
| Protein sequence | MWNESPYSKE VFAVPSDTLP PDKPILHYPS VTGIPAVVYD GLADVAGFTE PGANVFIFKE
GEKVGEAVAL ASHLVESKSF SFSGSDIAFS LDGTSAAYTL FNNVYEKNLS TGVETLLAES
ARNPVWNAAG DKIAMQFYDS RGNDRIAVFD VHTVKMTPLT AGLYVYEQTP AWSADGTKVI
FTSNKNGYQE IWSKDLISGA ETQVTHGVFA YNPKPSQDGS RIAFFDGSTL KVIDLQTAVT
TLVGTANQNT HNWSADGKRI SFRANKGTGY SIFSYDLMTG QTSEVAASVH YSIIPSWSPD
GSEILFAKAE PGGGYALLAS TLTGESRLVK KVTGNITYAN WEKDGRIWCL EYGTLHSAYL
AGHFALKGIR LDQGENTFSS VAVDAAGNAS QVSEEITVRY DTAFLPDVVP VNLTAYPTTP
KPSENVLLQA AVKNLSNVAI DNVEASLYLW DPAGDLKLLK SDVIPHMEGG AEETIGGSFI
LGSLTGTYSV IAILDPADKV TELDETNNYI SKEIYVTDKD GLIVTASVNV PQYTAGQDVG
ITMEVRNNGA AAEADYDGFI EDEAGNTVYT FDRSHVSLSY GGRQTISLKW NTGSTFAGCY
HVHWKQTTAA MEGVVPFAIL PEIIVTTTAV SDRTAYAPFD NVSLDVTVRN DGRNYIVPQF
QVKTSIFDSG NKLLFTNDKN DVNFFPGTLA SHSEIWSTGL ALAGDYRAVV ETWLDGAIVS
TKTVPFRINS IVQLRGTIST TPAVVSAGNH ATAEFTLTNI GNVPVDGLFK INVIEPDVQT
IVESFDYPMA LALNVSGKGS IDIPTEGLKL KPYIVTLAST GAAGQKTLAS ASFSVKDGIP
PVLTVISPNH GGIYDSTVQV AVIAADAHSG VDKVEFSIDN STWLPMAVAD PALGRYIGSW
RQPQVTATHV VIFRGIDRAG NTAVSGPVQF VIDTAPPELH VSTLSDGSYT RNEILNVSGT
VTDDTGVKEL KINNEVVAVN ADGTFSYAIV LQSGQNVLTT VTTDVANHTT TDTRTIYLDQ
KAPVIKIITP ADNSKTAQQQ IVISGTVDEN ATVEIMFKGV SPPVSMEGTS FSGSITADYG
QNTIEVTATD LAGNRSTEKR SVIFDDLAPS LSIKQPAQDI RTNVRSIVIQ GTVSDALTAV
TLALTYNGET FYPALVNGVF EQPVTFTEEK LHAVTITATD EVGNTSIVTR NIIYDITPPA
LIIDPVISPT NQDSQPVSGT REEGASIVVS CATATVGAVE YPTSTSWRAA LGGLSAGINT
ISVFALDAAT NQSTATTQIF YDTTPPVGSI AINNGAGATA SSQVTLTLAA GDESGVSKMR
ISNDGNVWSD PENYVTTRGW YLTQGDELKR VYVSYQDLAG NWSVPVVAEI VLDTTPPALS
VSPAGGIYNT ARSVILSANE PSVIRYTVDG STPDATSVVY QTPIQIAAST TLRFLAIDNV
GNDSEVKTED YIIDTVPPSL TVSTLADGAY TNIQVLNVAG SATDSSGIKS LVINGVDMAL
NQDGSFSQAL VLQPGPNALT VVVTDLAGNN STDVRIINLD MTAPLLTIIA PADNAKTASA
IMSVTGTVNE TSTVTVKLGA SVQQAAMDGT GFSASVSLIP GINTIEVTAT DLAGNTSSQK
RTVIYDDQKP SLAVIDPPQD IRTNQSGLIL MGTASDPYTQ VGVTITMDGQ SYTPQLVNDS
FQQALTFTQE KSYAIVVTAA NEVGSSTTTQ RNVIYDTTPP ALAINPVQSP ITASSVLLSG
TRETDLTVTV ACPTATVGTI IYPTPTTWQI QVSGMSLGEH IVTAESTDTA NNTSIVSVRI
VVQQSGADIV LTPSPTIIWP PNHKMVPVTI NGVLNVPPAD LKSLNITLTD EYGEYNFTKL
TLGSIVLLEA WRNGNDMDGR KYTFTAVLTR KDGSKTFASA VVLVPHDMSS DGNCGDKGDD
KDDKDDKDDK DDDHHQDDDH KGEIDKNDRG R
|
|---|
| |