| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_3435 |
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| Symbol | |
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| ID | 3741197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter metallireducens GS-15 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007517 |
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| Strand | - |
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| Start bp | 3856614 |
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| End bp | 3857573 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637780726 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_386372 |
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| Protein GI | 78224625 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 70 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 75 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACACAA CCTATGAATT CATAGCCCCC GGCGAGGGGG AGGCCGGCCG TCTTGACCAG
TTCGTGGCCC GCTCCGTGGA GGGGATGACC CGCTCCACGG TGCAGCGCCT CATCGATGAG
GGGCGGGTGA CAGTGGACGG GAAGGTGGAG AAGCCGTCCC TGAAGCTGCG GGGAGGGGAG
CGGATCGTGG TGGCGGTGCC GCCGCCGGCT CCGGCGGTTC CCGAGGCGGA GGAGATTCCG
CTCGTGATCC TCCACGAGGA CAGCGACCTG GTGGTGGTCA ACAAGTCGGC GGGGATGGTG
GTCCACCCCG GAGCCGGGAC GCCGGGCGGA ACCCTCGTGA ATGCGCTCCT GGCCCACTGC
ACCGACCTGT CGGGGATTGG CGGCGAGATC CGCCCCGGCA TCGTCCACCG CATCGACAAG
GACACCACCG GCGTCCTGGT GGTGGCCAAG AACGACCGTT CCCACGAGGG GCTCGCCCGC
CAGTTCCGGG AGCACACCAT CAAGCGGATC TACCTGGCCC TGGTCTTCGG CTCGCCGAAA
ACCGACACGG GGCGCATCGA GGGGGCCATC GGCCGCCACC CCACGGACCG CCTCCGGATG
TCGGGAAAGG CGAAACACGG CAAACATGCC GTCACCCACT GGAAGGTCCT GGCCCGCTAC
CCGGGGATGA CCCTCCTGCG GCTGCGGCTT GAGACGGGGC GGACCCACCA GATCCGGGTC
CACCTGGCGG AATCCGGGCA TCCCCTGGTG GGGGACGAGG TCTACGGGGG GGCCGGCCGA
GCCAACGACC TGCGGGACCC GGTCCTGAAG AAGCTCGTCC GGGAGCTGGG GCGCCAGGCC
CTCCACGCCA AGACCCTCGG CTTCATCCAC CCGGCCAGCG GCTCCTACGT CGAATTCGAC
ACGGAGCTGC CGGACGATAT GGCCCGAATC ATTACCTATC TTGAACAGCA AGGAGCATAG
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| Protein sequence | MDTTYEFIAP GEGEAGRLDQ FVARSVEGMT RSTVQRLIDE GRVTVDGKVE KPSLKLRGGE
RIVVAVPPPA PAVPEAEEIP LVILHEDSDL VVVNKSAGMV VHPGAGTPGG TLVNALLAHC
TDLSGIGGEI RPGIVHRIDK DTTGVLVVAK NDRSHEGLAR QFREHTIKRI YLALVFGSPK
TDTGRIEGAI GRHPTDRLRM SGKAKHGKHA VTHWKVLARY PGMTLLRLRL ETGRTHQIRV
HLAESGHPLV GDEVYGGAGR ANDLRDPVLK KLVRELGRQA LHAKTLGFIH PASGSYVEFD
TELPDDMARI ITYLEQQGA
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