Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gmet_2992 |
Symbol | dapF |
ID | 3740981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter metallireducens GS-15 |
Kingdom | Bacteria |
Replicon accession | NC_007517 |
Strand | + |
Start bp | 3376980 |
End bp | 3377828 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637780281 |
Product | diaminopimelate epimerase |
Protein accession | YP_385932 |
Protein GI | 78224185 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000000000459249 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.46742 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTA CCAAGATGCA CGGCGCCGGC AACGACTACG TCTACGTGAA CTGCTTCGAG GAGCGGGTCG ACAACCCGGA GCAGGTTGCC ATAAAGGTTT CCAACCGCAA CTTCGGCATC GGCTCCGACG GCCTCATCCT CATCATGCCC TCCGACAAGG CCGACGTCCG GATGCGGATG TTCAACTCCG ACGGCTCCGA GTCGGAGATG TGCGGCAACG GCATCCGCTG CGTGGCCAAG TACGCCTACG ACCATGGCAT CGTCTCCAAG AAGGAGATCA CCGCCGAGAC CGGCGCCGGC ATCCTGACGC TGCAGCTGGT GCCCGGTGCC GACGGCAAGA TCGAGAAGGT GCGGGTCAAC ATGGGCGTTC CCCGACTGAA GCGGGCCGAG ATCCCCATGG CGGGCGAGCC CGCCGACGGG CAGATCGTCA GCCAGCCCCT CAACATCCTC CACACCACCT TCAACATCAC CTGCGTCTCC ATGGGGAACC CCCACTGCGT CATCTTCGTG GACGACGTGG AGAGCTTCCA GGTGGAAAAG TACGGCCCCC TCATCGAGAA CCACGAGCTC TTCCCCCGCC GCACCAACGT GGAGTTCGTC CAGATCATAT CCCGCACCGA GGTGCGCCAG CGGACCTGGG AGCGGGGCGC CGGCGAAACC CTGGCCTGCG GCACCGGCGC CAGCGCCGTC TGCGTGGCCG GAGCCCTCAA CTGCCTCACC GAGAAGAAGA TCCTCAACCA CCTCTCGGGC GGCGACCTGG AACTGGAATG GGCCGACGAC GGCTTCCTCT ACATGACCGG CCCGGCCACG GAGGTCTTCT CCGGCGAGAT CGACCTGGCA AAGCTGTAA
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Protein sequence | MKFTKMHGAG NDYVYVNCFE ERVDNPEQVA IKVSNRNFGI GSDGLILIMP SDKADVRMRM FNSDGSESEM CGNGIRCVAK YAYDHGIVSK KEITAETGAG ILTLQLVPGA DGKIEKVRVN MGVPRLKRAE IPMAGEPADG QIVSQPLNIL HTTFNITCVS MGNPHCVIFV DDVESFQVEK YGPLIENHEL FPRRTNVEFV QIISRTEVRQ RTWERGAGET LACGTGASAV CVAGALNCLT EKKILNHLSG GDLELEWADD GFLYMTGPAT EVFSGEIDLA KL
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