| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2819 |
|---|
| Symbol | |
|---|
| ID | 3741085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 3188220 |
|---|
| End bp | 3191606 |
|---|
| Gene Length | 3387 bp |
|---|
| Protein Length | 1128 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637780104 |
|---|
| Product | putative rRNA methylase |
|---|
| Protein accession | YP_385762 |
|---|
| Protein GI | 78224015 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily
[COG2519] tRNA(1-methyladenosine) methyltransferase and related methyltransferases |
|---|
| TIGRFAM ID | [TIGR03480] hopanoid biosynthesis associated RND transporter like protein HpnN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000245096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA ACAGTGGTAC GAAACGCTTT ACCGGGCTTT TCGGGTTCGT TGCCCGCCAC
CCGCGGCTGA TTCTCGCGGT TGCTCTCCTC CTTTCAGTCC TCTCGGTGAT CTACACGAAG
GAGCGGATGG AGTTCCTCAC GGGCCGGGAC GACCTGATGC CGAAGAACGC CCCCTTTCAG
CAGGACTATC GAGCCATTCG GGCCGAGTTC GGCGACCGGG AAGAGATCGC GGTCGTCATC
GAGAGCGCTG ACGCAGCCGC GGCCTCCCGT TTCGGCGAAC GGCTCCAGGA GAAGCTGGCC
GCGGACCGGA CCCGGTTCCG TGAGGTCTTT TTCCCCGGGG GGATGCCGTT TTTCAAGGAG
CACGGCCTCC TCCTCATGCC TCTGGAGGAT ATCCGAAACC TCCGGAAGAA CTTTACCATG
GCAAAGCCGG TTCTCAAGGA GCTGGCAACA TCGCCCACCG TCCAGACCCT CTTTACCCAC
CTGACCGGCC GGATGGATGC CTACGTGGCC GGTGGCGGGA AGGGGGGGGA GGCTGAGCTG
GCCGGCATCA CCTTCATGCT CGACAAGCTC GGCACCGGCA TTGACGCCTT CGGCGGGGGA
AAGAAGGGCT CATTCTCCCT GGAGGAGGTA TTCCTCGGGG GGGATTCGGC CCTGGCCCGG
GCCGGCCGGA TGCAGATCCT GACGGTTCGG CCGGTGAAGG ACCCCGGGAG CTTTGTCCCG
GCCGTGGAGG CCATCGGCGC GGTGCGCAAG GAGGTCAAAG CCCTCAGGGC GCTCCCCGAG
TTTGCCGGGG TGACCGTGGG GCTCACCGGG ACCCCGGTCC TCGAATACGA GGAGATGGCC
ACCAGCGAGC GGGACATCAC CATCGCCACC GTCCTCTCCC TGGCCCTCAC GGTGGTGCTT
CTCCTCCTGG CATTCCGTGG GTTCCTGAAC GTCATGGCGG CCATGGTGAC CCTCATCGTG
GCGCTCTGTG TCTCATTCGG CCTGGCGACC CTGGTGGTGG GGCACCTGAA CATCCTCTCC
ATGGTCTTTG CCATCATGCT GATCGGCATC GGCATCGAGT ACGGCATCCA GGTGGTGCTC
CGCTACCAGG AGGAACTGGG GCTCGGGGAA GGCGAATTGG AGGCCATCAG TACGGGGCTC
AACCGCAACA TTTGGGCCAT CGTCATGGCC GCCTCCACCA TTGCCGCGGC CTTTTTCACC
TTCGTCTTCA CTGATTTCAA GGGAATCTCA GAGCTGGGTA TCATCGCAGC GCTGGGGGTC
TGCGTCTGCG TCCTGGCCAC CTTTACGGTC CTGCCGGCGG TCCTGGTACT TCTGGCGCCG
TACCGCAAGC GCAAGGAGGA GGAGCGGGAG GCCCGGGCCG CAACCATTCT TGCCCGCTCT
TCCCGGATGA AGGCCCTGGA GCGGTTCCTC TTCGGCCACC CGAAGACGGT CATCGGGATT
ACCCTCATCC TTTGCGCCGC GTCCATCTAT CCCCTGGTCC AGACACGGTT CGACTACAAC
CTCATGAACC TCCAGGCCAA GGGGCTGGAG CCGGTGGAGT ATGCCTACAA GCTGATGCGG
AGCAAGGAGA ATTCGGGCTA CTTCGCCGAG GTCGTGGCCT CGTCCGCCCC GGAGGCCCGT
GAGCTGACCC GGCGCCTCGA AGCGCTCCCC GCCGTTGACC ATGTGGTAAG CCTCGCCACC
TTTGTCCCCG ATGACCAGGA GGCGAAGATT GCAGAGCTGG CTGCCCTGCG GCGCGAGCTG
GCCGACGTGA AGCCCGCCCC CTACGAGGAG GACCTGCGGG TCATGGAGCT CCCCACGGTC
TTCGAGAACT TCAGAAACTC CGTGGAGCGG TTGAAGCTTT ACCTGGAAAA GGAACAGAAA
CCCGAAGCAA AGCGGGTCGG CGCCTTCCTG GCCACCCTCG ACCGTTTCTT TGCGACCCTT
GAAAAGGAGA AGGACAAAAA CGCCCTCGGG ATGCTGCGGG ACTTCCAGGG GGGAATGCTC
GCTTCCTTCC CGGAGAAGAT CGGGATGTTT GCCGACAGCC TCGCCGTCAC CCCGGTGACC
GAGGCGGATA TCCCGCCCCA GCTTCGGAAA CTGTTTGTGG GGAAAAGCGG GAAATACCTC
CTCCAGGTGG CCCCCAAGGA GGAGATTTTC GAGCGGGAGC CCCTGAAACG CTTCCTGGAC
CAGGTGCGGA GCGTGGCACC CCGGGCCAAC GGCGAACCGG TCATGGTCTA CGAGTCCATG
ACCATCATGC GCGACGCTTA CCTGCGGGCC TTTGTCTACG CCTTTGCCGC CATCGTGGTG
ATCCTCTTCG TCACCTTCCG GAGCGTCACC TACACCCTCG TGGGGCTCGT TCCCCTCGTG
GTGGGGATCC TTCTCATGGT GGGGGGGATG TGGCTTTTCG GGATCAGCTT CAACTCCGCC
AACATCATCG TCATGCCCCT CATCCTCGGC ATCGCCGTGG ACTCCGGCAT CTACATCATC
AACCGTTTCC GCCGCGAGGA CGGCGACGCC GCCTCGGTCA TCACGGGCAG CACCGGCCTG
GGGGTCGTCT ACAACACCCT TACCATCATG GCGAGCTTTG GCGCCCTCAT GGTGGCCCAC
CACCAGGGAG TATTCTCCAT CGGCGCGGTC ATGAGCCTCG GGATGGTGGC CTGCCAGGCG
GCCTTCGTGC TGGTGCTTCC GGCGGTTTTG ACGCTGGTCA AGGGCCGGGA CCGGGGACCG
GGGACCAGGT TTAGAAGCCA ACCGATTGCA GAGGCGACGA TGAACGGAAA TAATTCAGGA
AGAGACGAAG GTTTCAGGGT TGATGCCTTT GCCCGGTCCC CGGTCCCTGG TCCCCGGTCC
CGGGGACTTT CCGGCGCCGT GCAGTTGGCG CATTTCTTTC TCCAGGAACG CCTGAGGCCG
GGTGACCGGG CCGTGGACGC CACCTGCGGC AACGGCCACG ATACCCTCTT CCTGGCGCAG
TTGGTGGGGC CGCAAGGGCG GGTGTGGGCC TTCGACGTCC AGGCAAAGGC CCTGGCCGCC
ACGGAAGAGC GTCTCGCCGA GGCTGGTTGC CGTGATCGGG TCGCGCTCGT TCACGGCGGT
CACGAGCGCC TTGCCGAGGT GGTCACCGGT CCGGTCCGGG CCGTGGTCTT CAATCTGGGA
TTTCTCCCCG GTGCCCCCCG GGAGACCGTC ACCACCCCCG AGACCACCAT TGCCGGCCTG
GAGCAGGCTG CGGCGCTCCT CCTCCCCGGG GGGCTCGTAA CCGTCGCGGT CTACACGGGG
CATCCCGGTG GCGCCGACGA GGGGGCCGCC GTCGAGGATT GGGCAGCGGC CCTTCCCCCC
GGCCGGTTCA ACGTCTGGCA CTGCCGCCAG GGGAACCGGT CCGGAGCGGC TCCCTATCTC
CTGATCGCCG AGCGGGTTCC CGCGTAG
|
|---|
| Protein sequence | MEKNSGTKRF TGLFGFVARH PRLILAVALL LSVLSVIYTK ERMEFLTGRD DLMPKNAPFQ
QDYRAIRAEF GDREEIAVVI ESADAAAASR FGERLQEKLA ADRTRFREVF FPGGMPFFKE
HGLLLMPLED IRNLRKNFTM AKPVLKELAT SPTVQTLFTH LTGRMDAYVA GGGKGGEAEL
AGITFMLDKL GTGIDAFGGG KKGSFSLEEV FLGGDSALAR AGRMQILTVR PVKDPGSFVP
AVEAIGAVRK EVKALRALPE FAGVTVGLTG TPVLEYEEMA TSERDITIAT VLSLALTVVL
LLLAFRGFLN VMAAMVTLIV ALCVSFGLAT LVVGHLNILS MVFAIMLIGI GIEYGIQVVL
RYQEELGLGE GELEAISTGL NRNIWAIVMA ASTIAAAFFT FVFTDFKGIS ELGIIAALGV
CVCVLATFTV LPAVLVLLAP YRKRKEEERE ARAATILARS SRMKALERFL FGHPKTVIGI
TLILCAASIY PLVQTRFDYN LMNLQAKGLE PVEYAYKLMR SKENSGYFAE VVASSAPEAR
ELTRRLEALP AVDHVVSLAT FVPDDQEAKI AELAALRREL ADVKPAPYEE DLRVMELPTV
FENFRNSVER LKLYLEKEQK PEAKRVGAFL ATLDRFFATL EKEKDKNALG MLRDFQGGML
ASFPEKIGMF ADSLAVTPVT EADIPPQLRK LFVGKSGKYL LQVAPKEEIF EREPLKRFLD
QVRSVAPRAN GEPVMVYESM TIMRDAYLRA FVYAFAAIVV ILFVTFRSVT YTLVGLVPLV
VGILLMVGGM WLFGISFNSA NIIVMPLILG IAVDSGIYII NRFRREDGDA ASVITGSTGL
GVVYNTLTIM ASFGALMVAH HQGVFSIGAV MSLGMVACQA AFVLVLPAVL TLVKGRDRGP
GTRFRSQPIA EATMNGNNSG RDEGFRVDAF ARSPVPGPRS RGLSGAVQLA HFFLQERLRP
GDRAVDATCG NGHDTLFLAQ LVGPQGRVWA FDVQAKALAA TEERLAEAGC RDRVALVHGG
HERLAEVVTG PVRAVVFNLG FLPGAPRETV TTPETTIAGL EQAAALLLPG GLVTVAVYTG
HPGGADEGAA VEDWAAALPP GRFNVWHCRQ GNRSGAAPYL LIAERVPA
|
|---|
| |