| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_2381 |
|---|
| Symbol | |
|---|
| ID | 3740419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | - |
|---|
| Start bp | 2690401 |
|---|
| End bp | 2692110 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637779673 |
|---|
| Product | transmembrane protein |
|---|
| Protein accession | YP_385331 |
|---|
| Protein GI | 78223584 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000535308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGA TAGTTCCGCT GAAAGAGGTA GTGAAAAAAG GCACCCCTGA AGCGACGGTG
GAGGCAGTCC GGACGCCGGG CGTCTGGTGG GTCGTCATCC TCTGCGTTGC CTGGGTTGTG
CCGGGACTCG TGGGACATGA CCCCTGGAAG GCCGACGAAC CCTACACTTT TGGGCTGGTT
AACCATATCC TCCGGACGGG CGATTGGGTT GTGCCGACCC TGGCGGGGGA GCCGTTTCTC
GAGAAACCAC CCCTCTTCTT CATTACCGCT GCCGGTTTCG CCCGGCTCTT CTCGCCGCTG
ATGCCGCTCC ACGATGCGGC GCGTCTTGCC GCAGGTTTCT ATTCCCTTGT TGCACTCCTC
TTTGCGGGCC TGTCCGGCCG CGAGCTGTTC GGCAAGGGGA AGGGACGGAT CGCGGCGCTT
CTTGTCCTTG GATGCATCGG TCTGCAACCG ACAGCCCACA AGCTCATTAC CGACACGGCT
CTCTTCGCCG GTTTTTCGGT GGCTTTGTAC GGATTGGCGC TCTGTAGCCG CCGCCATCTG
ACCGGCGGAT TTCTCCTCGG CACCGGCACC GGTATGGGGT TCATGGCCAA GGGGCTCCTC
GCACCGGGGC TTCTCGGGCT GATTGCGATG GCCCTCCCAC TGGCTGCAAG TGAGTGGCGA
AGCCGCCGGT ACGCCGTGAC CTTGGCGGTC GCGCTGGTTG CGGCGGCACC GTGGTTTGTG
GTCTGGCCCT ACGCCCTCTA TCTCAAGGCG CCCCATCTGT TTGACGAGTG GTTGTGGGTC
CAGAATTTCG GGCGGTTCCT GGGACACAAC GATCTTGGCC CCAAGAATAA GCCCGGTTTC
TATCTCTATA CCCTGCCGTG GTACGCCTGG CCTGCTCTCC CTCTGGCCAT TCCGTCCGTC
GTGAAGGAGC GGTCGTGGCG CCGGAGCGGT TCTCCTCTCC TCCTTCCGTT GACGGCATTC
GTGGTCATGC TGGCAGTTCT GAGCCTCTCC CGTGACGCGC GAGGCCTCTA CGCCCTTCCG
ATGCTCCTGC CGCTTGGGTT TCTGGCGGTG CGAGGAGAGG AGTTGCTGAA CGGGCGCTTC
GCCAGGGGGC TGAACAGTGC AGCGGTTGTC ATCCCCACGG TAGCGGCTCT GCTTCTTTGG
GGCGGCTGGC TTGCCATGAC TACGGGGGTT CCTGCCGTGG TCTCAGACGC GATCCTGCGA
CGGCATCCCC ACGATCCGGT GGTCAGGCCA TTCCTGGTGG TAACGGCGCT GCTCTATACG
GTGGCATGGG GGGTGGCAGT CTGGCGCTGC AGGCGTATTG GGCCCCGTTT CAGCGTCATA
TGGGGGGCGG GGATGGTTAT GGTGTGGGGA GTTGTCATGA CACTGTGGCT TCCGTGGCAG
GACGCGGGGA AAAGCTATCG CGGCGTGGCG GCGTCGCTTG TTCAGGCGAT GTCGCCCCAT
GCCTGTATCT CCAGCAGGGG ACTCGGCGAA TCGGAGCGGG CGATGTTCGA ATATCTGGCC
GGCATCGTCA CGAAACGGGT GGAAGTTGGA GCGCCGGTGG GCTGCACGTT ACACCTTGAC
CAGTTGCGGA GCGAGCCGAA GGATAGCCCT CCCGCGGCCG GATGGGTGAA GGTATGGGAG
GGGAGAAGGC CGGGAAGCAA TGACGAGCGG TTTGTTCTCT GGCGGCGCGG CGATATCCCG
GGTCGGTCCA GGGTCAGTGC CGGGCCATGA
|
|---|
| Protein sequence | MKTIVPLKEV VKKGTPEATV EAVRTPGVWW VVILCVAWVV PGLVGHDPWK ADEPYTFGLV
NHILRTGDWV VPTLAGEPFL EKPPLFFITA AGFARLFSPL MPLHDAARLA AGFYSLVALL
FAGLSGRELF GKGKGRIAAL LVLGCIGLQP TAHKLITDTA LFAGFSVALY GLALCSRRHL
TGGFLLGTGT GMGFMAKGLL APGLLGLIAM ALPLAASEWR SRRYAVTLAV ALVAAAPWFV
VWPYALYLKA PHLFDEWLWV QNFGRFLGHN DLGPKNKPGF YLYTLPWYAW PALPLAIPSV
VKERSWRRSG SPLLLPLTAF VVMLAVLSLS RDARGLYALP MLLPLGFLAV RGEELLNGRF
ARGLNSAAVV IPTVAALLLW GGWLAMTTGV PAVVSDAILR RHPHDPVVRP FLVVTALLYT
VAWGVAVWRC RRIGPRFSVI WGAGMVMVWG VVMTLWLPWQ DAGKSYRGVA ASLVQAMSPH
ACISSRGLGE SERAMFEYLA GIVTKRVEVG APVGCTLHLD QLRSEPKDSP PAAGWVKVWE
GRRPGSNDER FVLWRRGDIP GRSRVSAGP
|
|---|
| |