| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1010 |
|---|
| Symbol | |
|---|
| ID | 3740353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1124642 |
|---|
| End bp | 1125103 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637778289 |
|---|
| Product | alkylhydroperoxidase AhpD core |
|---|
| Protein accession | YP_383977 |
|---|
| Protein GI | 78222230 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATCG AATATGTCAA AGTGGTGCCT GACGTATACA GAGCGATGAT GTGTCTAGAA
CATCAGGTCG AAAAGAGCGG TCTGGAAAGC CCACTGCTCG ACCTGATAAA GATGCGGGCA
TCGCAGATCA ATGGTTGTGC CTATTGCATC GACATGCATT CGAAGGATGC CCGGGCGCGA
GGTGAAACCG AGCAGCGGCT TTACGAACTG GATGCCTGGC GGGAATCACC GTTTTACACT
GAGCGGGAAC AGGCTGCATT GGCCTGGACC GAAGCTCTGA CGTTAGTCAC CAATGGTCAT
GTACCTAATG GGGTTTATGA GGAAGCCCGG AAACAGTTCA CCGATGTTGA GCTTGTTAAC
CTCACGCTTG CCGTCGTCGC AATAAATGGT TGGAACCGCT TGGGGATCGC CTTTCGTTCT
GTCCCTGGCG GGTACCATCC TGCCAGCGGC CTCTCACGGT GA
|
|---|
| Protein sequence | MRIEYVKVVP DVYRAMMCLE HQVEKSGLES PLLDLIKMRA SQINGCAYCI DMHSKDARAR
GETEQRLYEL DAWRESPFYT EREQAALAWT EALTLVTNGH VPNGVYEEAR KQFTDVELVN
LTLAVVAING WNRLGIAFRS VPGGYHPASG LSR
|
|---|
| |