Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_4058 |
Symbol | trmE |
ID | 6780921 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 4611310 |
End bp | 4612677 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642770051 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_002140844 |
Protein GI | 197120417 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.239105 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATGTCC GCGACACAAT TGCAGCGATC AGCACTCCGG TAGGGGAAGG CGGCATCGGG ATCGTCAGGA TAAGCGGCCC CGCAGCTCTG CAGATCGCCC GGAGCATCTT CAACGCCAAA TCGAACGGTG GCCTAAAAAG CCACCGTTTT TCTTATGGTG AAGTGGTACA GCCCGGAACC GGCGACCTGG TGGACGAGGC CATGGCTGTA TATATGAAGG CGCCCAACTC CTACACCCGC GAGGACGTGG TCGAGATACA GTGCCACGGC GGCACCCTCG TTGTCTCCCG CATCCTTGCG CTGGTGATCT CCCAAGGGTC GCGCCCGGCT GAGCCAGGCG AGTTCACCAA GCGCGCCTTC CTCAACGGGC GCATCGACCT GGTGCAGGCA GAAGCCGTGA TGGACGTCAT ATCCAGCCGT ACCGATGCGT CATTGGCACT GGCCCAGCAT CAGCGGGAAG GGCTCTTGTC GCAGCGCATC TCAACGGTGA AAGAGGGGAT AGTTTACGCG CTGGCCTATG TCGAGGCGTT GATCGACTTC CCCGAGGATG ACGTGAATGT CGCAGTAGAG ACCGACGTCT TGGGTAAAGT GGCCCCCGCT TTGGCTGAAC TCGACGCCCT GATAGCCGGC TTCGACGAGG GGAGGGTGCT TCGCGACGGC GTATCCGTCG TCATCGCCGG CAAGCCGAAC GTAGGAAAGT CGAGCCTGCT CAACACGCTC TTGAAGGAAA AACGCGCCAT AGTCACCTCC GTTCCCGGCA CCACCAGGGA CCTCATCGAG GAGGTCGTAA ACATAAACGG CCTACCGGTG AAGCTCCTGG ACACTGCCGG GATCCGCGAG TCGGAAGACC AAGTAGAGCA GGAAGGCGTG CGCCTTTCTC TGGACCGTAT TCCCAAGGCG GACCTTGTTC TTTTTGTCAT CGACGGGTCG TCCGCTTTCG GGGATGAAGA CGCCGCCATC CTGGAGGCAA TCGGATCGAA GAGCTGCATC GTGGTGCGCA ACAAGTCCGA CCTGCCGCTG GCGGTAGACC TTCCATCTGG CTGCTCCGCT CCGGTGGTCG CTATCTCCAC CCACACTGGA GACGGTGTCC CTCAACTGCG TGACGCCATC ACTAACGCCT TCATGCACGG GCACGCCATA GACGGCCGGG AGTTTGTAGC CCTCTCCAAG GCGCGGCATC GCGATGCGCT CTTGAAGGCG AGGGAGTCGC TGCAATCGTT CGTAGCGAAC CTGGAGTCGG GGGTGAATAT GGAGCTTCTG CCCGTCGATC TGCGCGATGC GCTGGACGCG GTAGGGGAGG TTACCGGCGA GACTACGGCG GACGACGTAC TGGACCGGAT TTTCTCCAGC TTCTGTATTG GGAAGTAG
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Protein sequence | MYVRDTIAAI STPVGEGGIG IVRISGPAAL QIARSIFNAK SNGGLKSHRF SYGEVVQPGT GDLVDEAMAV YMKAPNSYTR EDVVEIQCHG GTLVVSRILA LVISQGSRPA EPGEFTKRAF LNGRIDLVQA EAVMDVISSR TDASLALAQH QREGLLSQRI STVKEGIVYA LAYVEALIDF PEDDVNVAVE TDVLGKVAPA LAELDALIAG FDEGRVLRDG VSVVIAGKPN VGKSSLLNTL LKEKRAIVTS VPGTTRDLIE EVVNINGLPV KLLDTAGIRE SEDQVEQEGV RLSLDRIPKA DLVLFVIDGS SAFGDEDAAI LEAIGSKSCI VVRNKSDLPL AVDLPSGCSA PVVAISTHTG DGVPQLRDAI TNAFMHGHAI DGREFVALSK ARHRDALLKA RESLQSFVAN LESGVNMELL PVDLRDALDA VGEVTGETTA DDVLDRIFSS FCIGK
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