Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_3719 |
Symbol | |
ID | 6780583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 4244134 |
End bp | 4245351 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642769714 |
Product | TPR repeat-containing protein |
Protein accession | YP_002140507 |
Protein GI | 197120080 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAACGC AGAGAACGGC ATGGGACTAC ATGGACGACA TGTTCAGCAC CCTCGCCTCG CAGGACTCAC AGCGGGCGCA GCTGGCCAAC GGAGCCTTGA GCTCGGGCCT TGGGTACTAC CAGAAGAAGG ATTACGCCCG CGCCACGGGC GAGCTGAAGC GCGCCATCTC CATGGACCCC ACCAACACCC AGGCCTACAA GTTCCTGGCC AGCGCGTATC AGGCACAGGG GAAGACCGAC GAGGCGATCA AGACCTACAA GAACTCGCTG GCGCTCGACC CGACCCAGGA CTCCATACAC ACGAACCTCG GCAACATCTA CCTGCAGCAG AAGAAGTACA ACCTGGCCGA GAGGGAGTTC AAGGACGCCG CCAAGCTGAA CCCCACCGAC ACCCTCGCCC CCTATACGCT CGGGCAGCTC TACGTGCAGA CCGAACGCTA CGGCGAGGCG GAGACCCAGT TCAAGAAGGT CTCCAGGATG GCCCCCACCG ACCCTAACCC TTACTATTCC CTAGGCGCGG TCTACAACAA GGAAGGGAAA TACGCCGACG CGGTGAAGCA GCTTACGCAG GCCGTGAAAC TGCGCCCCAA GATGGAGGCG GCGCATTTCG AACTGGGCGT CGCCTATGCC GCCTTGGGCG ACACCACCAA CGCACAGAAA GAGGTCAACA CCCTCACCAC GCTGAACTCG ACTCAAGGGG CCCTGCTCAA GCTGACCATC GCCCAGCCGC AGATGATCGC GGCCGGCGGC GAGGACGACA CCTTCCTGCC GGCCAAGCAG ACCCCGAGCA CCAACCCCCA GCCGGGCGAC AACCCATACC TGCTGAGCCT GCTGGACGTA GTCGACCTAT CGGCGGCGAA CTCCTCGAAG GTGCTCAGCA TGACCTTCTA CTTCGACTCC GCCATGGACG CCGCTTCCGT GCAGGACACC AGCAACTGGA CCATCACCAA GGCGACGGGC GGGGCGGCCG GGTACTACAA CAACCTGCTG CCGATACTCC CCACAGAGGC GTACATCCCG CAAAACCCGC TCAGCGTGAC CTACGACCCC GAGAAGCGGA CCGCGACGGT CAACTTCATG CTGAGCCAGA ACGACACCGG CGACGCGACC ATCGACTCCG CGCACATGGT TTTCAAGTTC TCCGGCACCG ACGCCAGGGG GAAGGTCATG GACCCTGCAG CCGACGAGTT CGACGCCGCG GCGGAAGGGC CTTTCTGA
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Protein sequence | MATQRTAWDY MDDMFSTLAS QDSQRAQLAN GALSSGLGYY QKKDYARATG ELKRAISMDP TNTQAYKFLA SAYQAQGKTD EAIKTYKNSL ALDPTQDSIH TNLGNIYLQQ KKYNLAEREF KDAAKLNPTD TLAPYTLGQL YVQTERYGEA ETQFKKVSRM APTDPNPYYS LGAVYNKEGK YADAVKQLTQ AVKLRPKMEA AHFELGVAYA ALGDTTNAQK EVNTLTTLNS TQGALLKLTI AQPQMIAAGG EDDTFLPAKQ TPSTNPQPGD NPYLLSLLDV VDLSAANSSK VLSMTFYFDS AMDAASVQDT SNWTITKATG GAAGYYNNLL PILPTEAYIP QNPLSVTYDP EKRTATVNFM LSQNDTGDAT IDSAHMVFKF SGTDARGKVM DPAADEFDAA AEGPF
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