Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_3039 |
Symbol | |
ID | 6779895 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 3505256 |
End bp | 3507028 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642769033 |
Product | type VI secretion protein, VC_A0110 family |
Protein accession | YP_002139837 |
Protein GI | 197119410 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTGATG ACTTTCTAGA CTATTACGAA AAGGAACTCA GCTTCATTCG CGAGATGGGG AGCGAGTTCG CCAGGAAATA TCCAAGGATT GCGGGAAGGC TTCTGCTTGA GCCGGACAGG TGCGAGGATC CGCATGTCGA GAGGCTCATC GAAGCCTTTG CCCTTATCTG CGCGAGGATG CACAAAAAGC TCGACGACGA TTTCCCACAG ATCACGCAGT CCCTTCTGAA CGTTCTTTAC CCGCACTGCA CAAACCCCAT ACCTTCTCTG TCGGTGGTCA GATTCTCTCC CCTGATGAAG AACGTTCCTG ACACCGGCTA CCTGATCCCG AAAGGGACGA CCATGTTTTC CCGGGCGCTC GACGGCGTTC GCTGCCGGTT CGCCACCGCC TACCCCGTGA CGCTCTGGCC TATGGAAGTG GTGCATGCTG AGCTAGCGGA TCAGGTCATC ACCATAAGGC TGAAGCTGCA CAACAAGGTA ACCTTCGCGC GCTTACCCTC CGACAGCGTC CGTTTCTACC TCAATGGGCA GCGCCAGCAC ACCTTTCAGC TCTACGAGCA GTTGCTCAAT AACGTCTCCC GCATCGAATG CGTGGCGGTT GGGAAAAAGA TTCCCCCGGT AGCGATGACG AAGAACTGCA TCCGCCCGAT GGGATTTGAT GAACAGGAAA TGCTGCTCCC CTTCCCAAGG CAGTCGTTCA AGGGGTACCG CCTGCTGTTG GAATACTTCG CCTTCCCGGA AAAGTACCTC TTCCTGGAAG TGGCGGGACT CTCCTCTGCG CCCCTCGGTG ATTTCGGAGA TGCCCTGGAT CTGATCATAC ATCTCGAACA CGCAGCCGAA CCTTCCTTTC CTGTCAGCGC CGATACCTTC TGTCTAAATG CCACCCCCGC CGTAAACCTC TTCAGCAAAA TCGCCGAGCC GATCAGGATC GAGCACCGTC AGGCAGAGTA CCGGGTAGTC CCCGATTTAC GGTCCCCCGA AGCGATGGAG ATCTTCAGCA TCGACCGAGT AAGCGGCATA TCGGATACGC CCACCCCGGT CACCAGGGTC TACCGCCCGC TCTATGAAAT TACCCGTCTC GACTGCGGAA GCAGCGACAA CATCGAAGGG GTTTGGTGGC TAATGCAGCG CAAGGCTTCA GGAATAGCTG GGGATAGCGG CACCGAGGTG TTTCTTTCTT TTTGCGATCT CGCCTCAGAT CCCGCCGATC CGCCAGATGA AACCGTGACC CTGCGGCTGA CCTGCAGCAA CCGGGATCTT CCCGGCACGC TTCCGTGGGG GGATCCGGCT GGCGATTTCG ATATCGAGGC TGCTGCGCCG GTCGAAGCGA TCAATGCCGT GGTCAGGCCG ACGGCTGTGC GTCGTCCCGC CTTGTCCGGG GCTTCGCAAT GGCGGCTCAT CTCGCATCTT TCCCTCAACC ATCTTTCGCT TCTGGAATCT GAGGGGGCAG CGCTCAAGGA CATGCTGAGG CTGTACGACT TCGAGGATTC ACCCGCGACA CGACAGCAGA TAAATGGAAT CGTGTCGGTC ACATCCAGGC ACGTCACCAG GAGGATCGGC GCTCTTTTTT GTCGTGGCGT CGAAGTCACC ATCGAGTTCG ACGAGCGGCA GTTTGTCGGG AATGGGGTCT ACCTTTTCGC CTCAGTCCTG GAGAGGTTCC TGGGAGAGTA CGTTTCGCTG AATTCCTTCG TGCAACTCGT CGCCAAAAGT CGCCAACGTA AGGAGGTCAT GAAGAAATGG CCGCCCAGGA ACGGGGACCG GGTGCTGCTG TGA
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Protein sequence | MGDDFLDYYE KELSFIREMG SEFARKYPRI AGRLLLEPDR CEDPHVERLI EAFALICARM HKKLDDDFPQ ITQSLLNVLY PHCTNPIPSL SVVRFSPLMK NVPDTGYLIP KGTTMFSRAL DGVRCRFATA YPVTLWPMEV VHAELADQVI TIRLKLHNKV TFARLPSDSV RFYLNGQRQH TFQLYEQLLN NVSRIECVAV GKKIPPVAMT KNCIRPMGFD EQEMLLPFPR QSFKGYRLLL EYFAFPEKYL FLEVAGLSSA PLGDFGDALD LIIHLEHAAE PSFPVSADTF CLNATPAVNL FSKIAEPIRI EHRQAEYRVV PDLRSPEAME IFSIDRVSGI SDTPTPVTRV YRPLYEITRL DCGSSDNIEG VWWLMQRKAS GIAGDSGTEV FLSFCDLASD PADPPDETVT LRLTCSNRDL PGTLPWGDPA GDFDIEAAAP VEAINAVVRP TAVRRPALSG ASQWRLISHL SLNHLSLLES EGAALKDMLR LYDFEDSPAT RQQINGIVSV TSRHVTRRIG ALFCRGVEVT IEFDERQFVG NGVYLFASVL ERFLGEYVSL NSFVQLVAKS RQRKEVMKKW PPRNGDRVLL
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