| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2121 |
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| Symbol | |
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| ID | 6782115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 2460646 |
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| End bp | 2464161 |
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| Gene Length | 3516 bp |
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| Protein Length | 1171 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642768116 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_002138930 |
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| Protein GI | 197118503 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.48946 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCTACG ACCAATCCGC ATCCAGGCTG CCTGCAGAAG GGATCGAGGA ACTGAGGGCG
CACTTGGCCG CCATCGTCGA TTCCTCCGAC GACGCCATCG TCAGTAAGTC CCGGGAAGGG
ATCGTCACCA GTTGGAACCA GGGTGCCGAA AGACTCTATG GCTACAGCGC CGCCGAGGCC
ATCGGGCGCC ATATCTCGTT CCTGGTGCCT CCGGAGCGCC TCGACGAGCA GAGGCAGCTT
ACCGAGAAGA TACTGCAAGG GGAACGCGTC AAGAACCTGG ACACCATCCG TCTCCCCAAA
AACGGGGGTG AAATCCCCGT CTCCCTCACC CTCTCCCCCA TCTACTGCGA GACCGGCACC
ATCACAGGGA TTTCCATCAT AGCCCGCGAC AATACGGAGC GCCTGAGGAT GGTGCGGCTT
TTGCGGGAGA GCGAGATGCG CTACCGGGTC CTTGTAGAGA TGGCCCCCGA CGCCGTCTTC
GTGCACCAGG ACGGGCGTTT TGTCTATGCC AACTGCGCGG CCTTAGGCAT CTGCGGGGTG
CGGAGCAGGG AAGAGCTGCA AAGGCGCACC CTCTTTGACC TGGTGCATCC CGAGGACCGG
GGAAAACTGC GTCAGCGCAT CGACGAACTA AAGGCGGACC AGGGGATAGC GCAGCAGGAA
TACCGGATGT GCTGTCCGCA GGGCAAAGAG CTGGTCCTGG AAACATCCTC CAGCCTCATC
GACTACCAGG GAATTCCTTC CATACAGGTC ATCGCCCGCG ACGTAACGCT ACGGAAGCAG
CAGGAGCGCG AGCGTGAGCA GATGCTCAAG GATCTCGCCT TTCAGCAGAG CCGTTTCGAG
ATCATGGTCA GGCAGTTGCC GATAGGGGTG GTCATCGCCG AGGCTCCATC GGGCAAGACC
CTTTACCAAA ACGAGCGCTC CCGGCAGATA TTCGGGCGCG ATATCGCCCC CGTCTCAGGA
ATCGAAGATT ACCGGCAATG GGAGATGTTT CGCCTGGATG GCGCCCCCCT TCCCGCCGAA
CAGTGCCCCG TCGCCCTCTC TCTGCTGCAA GGGGAGATCA TCTCCGGGGA CGAGTACAAG
ATCAGGCGGG GCGATGGCTC CTACGGTTAC ATCTGCGTCA ACTCGACCCC GCTGCGGGAT
GCCTCTGGGG AGATCGTCTC CGCCGTGGCG GCCTTCACCG ACATCACCGA AAGCAAGCTC
GCGGCCCAGG CGCTCTTTGA GAGCGAGGAA CGCCTGAAGC TGGCGCTCGA TGCGGCCGAG
ATGGGATCCT GCGATATTGA CGTGAATACA GGCGCGGGGA TCTGGTCCCT GTATCACTTC
ACGCTCCTGG GCTACCCCGC GCCCGAAGGC GAATCGGCCC CGGCCGCAAC CTCCATGTGG
CTCGATCTGG TGCATCGGGA CGACCTGGAA GAGGTAAAGA GGCTGCTGGA ACAGGCCCGC
AGGGACGACA CCCTGTTCCG CTCGGAGCAC CGCATCCTCC GGGCCGGCAG CGGCGAAACC
GTCTGGGTCA ACGTGATGGG GCGCTTCATC TGCGAGCAGA CGGAAGGAAG GTGCCGCTTC
ATCGGCGTCA TCTTCGACGT CAGCGAACGC AAGGCTGCTG AGGAGGCGCT TTTGCGCAAC
GTCCGGCGCT TTAGGCGCAT GGCGGATACG ATGCCCCAAA TATTCTGGAC CGCGAGGCCA
GACGGCAGCG TGGACTACAT CAACGCCTAC TTCGAGGAGT ACGCCGGCAT CGACAGAAGC
GGCGTGGAGG AGGGGCACGT CACCGCTGAG ACCCTCCTCT CCGGTGTGGT CCATCCCGAT
GACCGTGACG GGCTGGAGAG CGCCTGGTTC CGGTCCATGG AGAGCTGCGA GCCGTTCCAG
TACGAAAGCC GGGTGCGCCG CAAAGACGGG GTCTATCGCT GGCATCTGAG CCGTGCCCGG
GCCGAGCTCG ACGAGCAGGG AAGGGCGGTC AAGTGGTACG GGACCGCGAC CGACATCGAC
GAGCTGAGGG AGACGCAGGA AAAGCTCGCG GCCAGCGAGA CCAGGTTCCG TTGGCTTTAC
GAATCGAACC TGATCGCCAT CTTCTACTGG AACCGCGACG GCGCCATCAC CGATGCGAAC
CAGGCCTACT GCGACCTGGC GGGGTACACC GCCGAGGAAT GCCGGTCGGG AGGGCTCAAC
TGGTTGGACG TGACGGCACC CGAGTACCTG GAAAAAGACG TAGCCGCCGT GGCGGAGAGC
CAGATTCACG GCATCTGCAG GTCCTACGAG AAGCTCTTTA TAAACCATGC TACCGGCGTG
AAGGTGCCGG TACTGACCGC CATCGCCATC TCGGCCGGCT CCGACGAGGG GATCGGCTTC
GCCGTGGACC TGACCGAGCT GAAGCGCGCG GAGCATGCGC TGAAGCACAG CGAATCCACG
CTGAAACTCG CCGTCGAGAC CACCGGGCTC GGCATCTTCG ACCTCGAGCT GAAAACCGGC
AAGGGGGAGT GGTCCCCTAT CGCCAAGAGT CACTACGGCC TCCCTGCCGA TGCGGAAGTG
GACCTCTCCA CGGTGATTAC AGGGGTGCAC CCGGAAGACA AGGAGAAGGT AGAGCGGATC
GCCAGGGACG CCGCGAGCCC CGGAGGCGCC GGCATTTACA GCGCCGAATA CCGTACCGTA
GGCGCCATGG ACGGCAAGGT CCGCTGGCTC AGCATGCGCG GCCGGGTCTT CTACGACGAC
GAGGGGACTC CGTTGCGCCT GGTCGGCGCC TGCCTCAACG TAACCGACGT GGTGCAGGCC
CAGGAGACGC TCAACGAAGA GATGAGCGAA AGGCTGCGTG CGGTCGAAGA ACTGCGCCGC
CAGGAGCAGT TGCTGATCAG GCAGGGGCGG CTTGCGGCCA TGGGAGAGAT GATCGCCAAC
ATAGCGCACC AGTGGCGCCA GCCCCTGAAC ACGCTGGGGC TCATCATCCA GGAACTTCCC
ACTTACCACG AGCGGAACCT TCTCACCGTC GAGTACCTGG AGGGGAGCGT CTCCCGTGCC
ATGCAGGTGA TCAACTACAT GTCCCAGACC ATCGACGGGT TCCGCAACTT CTTCGGCCCG
GACAAGGAAT ACCAGACCTT CCTGGCGAGC GAGGTGCTGG AGAAGACGGT CTCCATCCTC
GACGCGGCGT TCGCCGAGCT GAACCTGGAA CTTGTGGTGT GGGTGGACCG CGAGGCGGTG
GTGCACGGCA TACCGAACGA GTACTCGCAG GTGCTTCTCA ACATCCTGAT GAACGCGAAA
GACGCGCTCC TGGAGCGCAA GGTCGAGCAT CCAAAGGTCG AGGTCAGGCT CTTCAGGGAG
GGGGGGAAAT CGGTGGTCAC CATCACGGAC AACGCAGGGG GGATACCCAC GGAGATCATG
GACAAGATTT TCGACCCGTA CTTCACCACC AAGGGACCGG ACAAAGGGAC CGGCATCGGC
CTGTTCATGT CCAAGACCAT CATCGAGAAA AACATGAAGG GCTCGCTTAC GGTGACAAAC
CAGCCGGAAG GGGCCCAATT CCGCATCGAG GTCTGA
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| Protein sequence | MAYDQSASRL PAEGIEELRA HLAAIVDSSD DAIVSKSREG IVTSWNQGAE RLYGYSAAEA
IGRHISFLVP PERLDEQRQL TEKILQGERV KNLDTIRLPK NGGEIPVSLT LSPIYCETGT
ITGISIIARD NTERLRMVRL LRESEMRYRV LVEMAPDAVF VHQDGRFVYA NCAALGICGV
RSREELQRRT LFDLVHPEDR GKLRQRIDEL KADQGIAQQE YRMCCPQGKE LVLETSSSLI
DYQGIPSIQV IARDVTLRKQ QEREREQMLK DLAFQQSRFE IMVRQLPIGV VIAEAPSGKT
LYQNERSRQI FGRDIAPVSG IEDYRQWEMF RLDGAPLPAE QCPVALSLLQ GEIISGDEYK
IRRGDGSYGY ICVNSTPLRD ASGEIVSAVA AFTDITESKL AAQALFESEE RLKLALDAAE
MGSCDIDVNT GAGIWSLYHF TLLGYPAPEG ESAPAATSMW LDLVHRDDLE EVKRLLEQAR
RDDTLFRSEH RILRAGSGET VWVNVMGRFI CEQTEGRCRF IGVIFDVSER KAAEEALLRN
VRRFRRMADT MPQIFWTARP DGSVDYINAY FEEYAGIDRS GVEEGHVTAE TLLSGVVHPD
DRDGLESAWF RSMESCEPFQ YESRVRRKDG VYRWHLSRAR AELDEQGRAV KWYGTATDID
ELRETQEKLA ASETRFRWLY ESNLIAIFYW NRDGAITDAN QAYCDLAGYT AEECRSGGLN
WLDVTAPEYL EKDVAAVAES QIHGICRSYE KLFINHATGV KVPVLTAIAI SAGSDEGIGF
AVDLTELKRA EHALKHSEST LKLAVETTGL GIFDLELKTG KGEWSPIAKS HYGLPADAEV
DLSTVITGVH PEDKEKVERI ARDAASPGGA GIYSAEYRTV GAMDGKVRWL SMRGRVFYDD
EGTPLRLVGA CLNVTDVVQA QETLNEEMSE RLRAVEELRR QEQLLIRQGR LAAMGEMIAN
IAHQWRQPLN TLGLIIQELP TYHERNLLTV EYLEGSVSRA MQVINYMSQT IDGFRNFFGP
DKEYQTFLAS EVLEKTVSIL DAAFAELNLE LVVWVDREAV VHGIPNEYSQ VLLNILMNAK
DALLERKVEH PKVEVRLFRE GGKSVVTITD NAGGIPTEIM DKIFDPYFTT KGPDKGTGIG
LFMSKTIIEK NMKGSLTVTN QPEGAQFRIE V
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