| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2120 |
|---|
| Symbol | |
|---|
| ID | 6782114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2458999 |
|---|
| End bp | 2460642 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642768115 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002138929 |
|---|
| Protein GI | 197118502 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGATG AGCCTGCCCG GGGGAGCGAA GGGATCCCCC TGCCGCGCGA GGTCGGCGGC
ATAGCCCTTT TGTACGTAGA GGACGAGGCG GACGCGAGAG TCATGGTGGC GAAGATGCTC
AGCATGAACT ACCCGCACCT CACCATCTAC CACGCCGACA ACGGTGCCTC CGGGCTTGAG
CTTTACCGGC AGCGGCGCCC CGACATCGTG ATGACCGACA TCAACATGCC CGTCATGGAC
GGGATCAGGA TGTCCCGGGA AATCAAATCC CTAAACCCCG AAGTACACAT CATCGCAGTA
ACAGCCCACA GCGACACCTC CTACCTCTTG AACGCCATCG AAATCGGCGT GCACAACTAC
GTGCTGAAGC CGCTCAACTA CCAGGAACTG TTCGGCGTGA TCGACAAGGT GCTGGAACAG
GTGACACTGA AGCGCCTGGT GGGGGAGCAA AACCAGCGCA TCCTCGAGAG CGAGAAGCAG
TTGGCCGGCT CCCAGCGTAT CGCCCACCTG GGAAGCTGGG AGTGGCACGT TGACTGCGGC
ACCATGAAAT GGTCGGACGA GCTCTACCGC ATCTGCGGCC TCGATCCCGG CTCTCTCACC
CCTGACTACC AGCGTTTCCT GGAGCTTTTC TCCGTAGAAG ACCGCCCGGT CATCGAGGGG
CTCATGCATG ACGCCCTGAA GGGAGAGGCG GAGGAGGATC ACCGTTTCTG CCGCGTGCTC
CGACCCGACG ATTCCAGAAG AATCGTCCGG GTGGAAGCGG ACCTCTTGAC GGAGGACCGC
GGCCAGAAGG CGACGGTGAT CGGCACCTGC CACGACGTGA CCGAGCTGAA GGAAGCGGAG
GAACAGGTTC GGCTGTTGAC GGAGGACCTA GAGCGGCGCG TGATCCAGCG CACCTCGCTT
TTGCAGGCGA CGGTGAGCGA ACTAGAGAGT TTCAGCTACT TCGTCTCTCA CGATCTACGC
GCGCCGGTGG CCCGGCTGGA AGGTTACTGC AAGGCGCTTT TGGAGGACTG CGGGGCCGAG
GGGCACGGCA ACTGCCAGCA GTACGCCGAA CGCGCCGAGC ACGTGGCGCA GCAGATCAAG
CAGATCATCG ACGCTTTCAA CAGCCTGACC CACTACGCGC GTTGCGCCCT TGCCCTAGGC
GAGACCGACC TGAGCTCGAT GGTAAGGGAG GTGGCTCAAG AGCTTCAGCA GGGCGAGCCG
CAGCGCCGGG TCGAGGTTCT GGTGGCGCCC GGTATCAGGG TGAGGGGGGA CGCGGAACTG
CTGCGGACAG CCTTGAGCGA GCTTTTGAAA AACGCCTGGA AGTTCACCTC CACGACGGAG
TACGCCCGCA TCGAGTTCGG CAGGCGCGTG CAGGAAGGGG CATCGATCTA CTACGTAAAG
GACAACGGGG CCGGTTTCAA CATGAAGTAC GTCGACAAGC TCTTCAAACC TTTCCAGACC
ATCCACACCC CCGGCGAGTT CGATTGGAGC GGCACCGGGA TCGGTCTCGC CAAGGTGCAC
AGCATCATCC TGCGCCACGG CGGCCGGGTC TGGGCTGAGG GAGAGGTCGG CTACGGGGCG
ACCTTCAGCT TTACCCTGGA ACCCAACCCC GAAACGGGGA GCTATCTGAC GGAGGGGCTT
TCCTCCCAGG AACAAAGGGG CTAG
|
|---|
| Protein sequence | MPDEPARGSE GIPLPREVGG IALLYVEDEA DARVMVAKML SMNYPHLTIY HADNGASGLE
LYRQRRPDIV MTDINMPVMD GIRMSREIKS LNPEVHIIAV TAHSDTSYLL NAIEIGVHNY
VLKPLNYQEL FGVIDKVLEQ VTLKRLVGEQ NQRILESEKQ LAGSQRIAHL GSWEWHVDCG
TMKWSDELYR ICGLDPGSLT PDYQRFLELF SVEDRPVIEG LMHDALKGEA EEDHRFCRVL
RPDDSRRIVR VEADLLTEDR GQKATVIGTC HDVTELKEAE EQVRLLTEDL ERRVIQRTSL
LQATVSELES FSYFVSHDLR APVARLEGYC KALLEDCGAE GHGNCQQYAE RAEHVAQQIK
QIIDAFNSLT HYARCALALG ETDLSSMVRE VAQELQQGEP QRRVEVLVAP GIRVRGDAEL
LRTALSELLK NAWKFTSTTE YARIEFGRRV QEGASIYYVK DNGAGFNMKY VDKLFKPFQT
IHTPGEFDWS GTGIGLAKVH SIILRHGGRV WAEGEVGYGA TFSFTLEPNP ETGSYLTEGL
SSQEQRG
|
|---|
| |