| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0344 |
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| Symbol | |
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| ID | 6783170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 420611 |
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| End bp | 424003 |
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| Gene Length | 3393 bp |
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| Protein Length | 1130 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642766313 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_002137171 |
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| Protein GI | 197116744 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGAT TCGACCTGCT CCATACCCCG CTTGCCGGGC GCAATCTGAT CGAGGCGAGC
GCCGGCACCG GCAAGACCTT CACCATCGCC GGGGTCTACC TGCGCCTGGT GCTGGAACAG
AAATTCGACG TCTCGCGCAT CCTGGTGGTC ACCTTCACCG AGGCCGCGAC GAAGGAGCTC
AAGGAGCGGA TCAGGAACAA ACTGAAGGAA GCCGAAAACG GCTTCCTGAC CGGCGCCACG
GACGACTTCC TGATCGAGGG GCTGCTCAAG TCGACGCAGG ACCACTCCGA GGCGCGGCGG
CTTCTGTCGA GCGCCATACG GAGCTTCGAC GAGGCCGCCA TCTTCACCAT CCACGGTTTC
TGCCAGAGGA TGCTGCAGGA CAACCCCTTC GAAAGCGGCT CCCTGTGCGA TACCGAGCTT
GTCACCGACC AAGGGAAGAT CCTGATGGAG ATCGCCCAGG ACTACTGGCG CATCAACTGC
TACGGCCAGC CTGAGGAGAG GATCGCCGCG GCCGGCGCCG CCAAGGTCTC CCCGGAGTCC
CTGCTGAAGC TGGTGCAAAG GGTCTGCGGA GACCCGAACG CCGCAGTGAT CCCGGACCCG
CCCGCCGACG CCAACGAGCT GGATGATTGG CTCCAGGGGC TCAAGCGCGG CTTCTTCGAC
TACCTGCGCG CCGAGCTCCC GAAACGAAAG CGGCTCAAGA ACCTGCGCTC CTTCGACGAC
CTCCTCCTCG ACCTGCACGC GGCGCTGCTG CGCCCCGCAT CGACGCTGCC GCGGCTGATC
CGCGAGCGCT ACCAGGCAGC CCTCATCGAC GAGTTCCAGG ACACGGACCC CCTCCAGTTC
GCCATCTTCG ACGCCATCTA CCCGGTGGGA CACGAGGCCC CTTTCTTCCT GATCGGCGAC
CCGAAGCAGG CCATCTACAG CTTCCGCGGC GCCGACATCT TCGCCTACAT GGGGGCGGCC
CAGGCGACAA AAGAGCGCCA CACCCTGCTG CAGAACTTCC GCTCCGAAGC GGGGCTGATC
GATGCCGTCA ACGCCCTCTT CGCGTCGCGC GAGCTCCCCT TCCTCTACCC GCAGATAGGC
TTCAACAAGG TGGAAGCGGC TCCCAAAGAG AAGAGCAGGC TCGTGGAAGC GGGGCAGAGG
AAGGCGCCGT TAAAGCTCTG GCTCGCCCCG CGCAAGGACG CCGGCAAACC GATCAACAAA
GGGGATGCCT GGGAGCAGCT CCCGGAAACG GTGGCGGCGG AAATCTCGCG CCTTCTGCGC
GACGGCGCGG ACGGGAAGCT GACCGTCGAG GAGCTCCGGA AGGACGCCGA GGAGGGGAGC
GAGAACTGGG TGCAGCGCGC GGTCGAACCG AGGGATATCG CCGTCCTGGT GCGCGCGAAC
CGGCAGGCGA AGCTGATGCA GCGGGCGCTG ACCCACAGGG GGATACCGAG CGTCCTCTGT
AGCGCGGGTA ACCTCTTCGA GTCCGACGAG GCGGCGGAAC TGCTCCGGCT CCTCTCGGCG
GTGGCGCAAC CGGGGCACGA GTCGCTTCTG CGCGGGGCGC TGGCCACCGA CCTGGTCGGG
GTGAGCGGGA CGGAACTGGC CCGGCTCATG GACGACGAGA AGGGGTGGGA AGAGATCCTG
GAGGAATTCA GGAGCTATCA CGACACCTGG AACAGCGGCA GCTGCATGTC CATGGCGCTG
CAGTTCATGG AAAAGCGCGA GGTCAGGAAG CGGCTGCTCG CTGAACCGAT GGGGGAGCGG
CGCCTTACCA ACCTCCTGCA CGCCATCGAG ACCATCCACC AGGCGCAGGT CAACGAACGC
CTGGGGATGG AAGCGGTCAT CTCTTGGCTC GCCTGCCGCA TCACTGAAGA GCCCAAGAAG
GATGAGTACG AGATCCGGCT GGAGACCGAC GAGGCCGCGG TGCAGTTGGT CACCATCCAC
AAGAGCAAGG GGCTCGAGTA CCCCATCGTG TTCCTCCCTT TCTGCTGGGC GGAGTACGCC
GGCAAGGACG AAGGGGCGCT CTTCCACGAC GAGGACGGCC GGGTGGTGCT GGACATAGGC
TCCGAGCAGA TGGGAGAGCA CAAGGCGCAG GCCGCGCGGG AGGCCCTGGC CGAGAGCCTG
CGCCTTCTCT ACGTAGCCCT CACCCGCGGC AAGCACCGGA CCTACCTCAC CTGGGGCGTC
TTCAAGGATG CCGGCGACAG CGCGCTGCAC TACCTGCTGC ACCCTGGCGA GACGCCGGTC
AAGGGGCAGG TGACGCTGAG CGATGCCGAC ATCCGCAAAA GACTCGACAC GCTGGCGGCC
TCCTCCGCCG GGAGAATCGA GGTCCTGGAT CTCCCTGCGG CCGACCTGGC GCCATACCGG
GCGCACGACA AGAAGGCGCC GGACCTCGCG CCGCTTCCCT TTACCGGCGC CATCTCCCGG
GACTGGCGTG TGGCGAGCTT CACCTCGCTC TCCAGCCACA AGCACCACAC AGCCGAGCTT
CCCGACCGCG ACGAGGGGAG CCCGGTCGAG GAGCGGCCCG TGCACGATGT CGAGCCGACC
GGGATCTTCG CCTTTCCCAA GGGGGCCAAG GCCGGCATCT TCCTGCACAA GATCTTCGAG
GACCTCGATT TCACAAGGGT GGGCGAGCAG CTCTCGCCCC TGGTGAAGGA GCAATTGGAC
AAGCACGGCT TCGCCCCCGA CTGGAGCCAG GCGGTGCGCG ACATGGTGCA AAACGTGCTG
CAGGCGCCGC TGGGAGACGG GGAGATCGCG CTGGCTCAGG TGGGGTTGGA GCGGCGCCTC
ACCGAAATGG AATTCTTCTT CCCTCTTTCG CACGTTACCT CCGACCGTCT GAGGGAAGCC
GCCGCCCGCT TCACGGCCGG ACACGGCACG GCGGGAGTCG CCGGGTTACC GGTCGATCTG
GCCGATCTTT TCAGCCGCCT GTCCTTCGCG CCAGTGCAGG GGATGCTGCT CGGCTTCATC
GACCTTGTCT TCGAGCACGG CGGGCGTTAC TACATCGTGG ACTGGAAGTC CAACCACCTG
GGTAACACCC CCGGCAACTA TGGGCAGGCG GCGCTGAAAA AAGAGATGGA AGAAAACTTC
TATCCCCTGC AGTACCTCCT CTACACGGTG GCGCTCGACA ACTACCTGAG GCTCAGGATC
CCCGGGTACG ATTACGACCG GCACTTCGGC GGCGTCTTCT ACCTTTTCCT GCGCGGCGTC
GACGGGACCG GGAACGGGGT CTACGCCGAC CGGCCGCCCA GGGAACTCAT CGCCCATCTG
GCAGAGGTGC TGCTCCCGGA GAGCGCGAGA CCTTCCCGGA TTGATGAACC AAGCCCCTCA
CCCCTACCCT CTCCCGCCGG GCGAGGGGGA GTTGGGAAGA AGCCGAGAAA GACCGAGATA
GAGGGGCAGC TCAGCCTCGA TCTCTTTGAC TGA
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| Protein sequence | MKRFDLLHTP LAGRNLIEAS AGTGKTFTIA GVYLRLVLEQ KFDVSRILVV TFTEAATKEL
KERIRNKLKE AENGFLTGAT DDFLIEGLLK STQDHSEARR LLSSAIRSFD EAAIFTIHGF
CQRMLQDNPF ESGSLCDTEL VTDQGKILME IAQDYWRINC YGQPEERIAA AGAAKVSPES
LLKLVQRVCG DPNAAVIPDP PADANELDDW LQGLKRGFFD YLRAELPKRK RLKNLRSFDD
LLLDLHAALL RPASTLPRLI RERYQAALID EFQDTDPLQF AIFDAIYPVG HEAPFFLIGD
PKQAIYSFRG ADIFAYMGAA QATKERHTLL QNFRSEAGLI DAVNALFASR ELPFLYPQIG
FNKVEAAPKE KSRLVEAGQR KAPLKLWLAP RKDAGKPINK GDAWEQLPET VAAEISRLLR
DGADGKLTVE ELRKDAEEGS ENWVQRAVEP RDIAVLVRAN RQAKLMQRAL THRGIPSVLC
SAGNLFESDE AAELLRLLSA VAQPGHESLL RGALATDLVG VSGTELARLM DDEKGWEEIL
EEFRSYHDTW NSGSCMSMAL QFMEKREVRK RLLAEPMGER RLTNLLHAIE TIHQAQVNER
LGMEAVISWL ACRITEEPKK DEYEIRLETD EAAVQLVTIH KSKGLEYPIV FLPFCWAEYA
GKDEGALFHD EDGRVVLDIG SEQMGEHKAQ AAREALAESL RLLYVALTRG KHRTYLTWGV
FKDAGDSALH YLLHPGETPV KGQVTLSDAD IRKRLDTLAA SSAGRIEVLD LPAADLAPYR
AHDKKAPDLA PLPFTGAISR DWRVASFTSL SSHKHHTAEL PDRDEGSPVE ERPVHDVEPT
GIFAFPKGAK AGIFLHKIFE DLDFTRVGEQ LSPLVKEQLD KHGFAPDWSQ AVRDMVQNVL
QAPLGDGEIA LAQVGLERRL TEMEFFFPLS HVTSDRLREA AARFTAGHGT AGVAGLPVDL
ADLFSRLSFA PVQGMLLGFI DLVFEHGGRY YIVDWKSNHL GNTPGNYGQA ALKKEMEENF
YPLQYLLYTV ALDNYLRLRI PGYDYDRHFG GVFYLFLRGV DGTGNGVYAD RPPRELIAHL
AEVLLPESAR PSRIDEPSPS PLPSPAGRGG VGKKPRKTEI EGQLSLDLFD
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