| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2883 |
|---|
| Symbol | |
|---|
| ID | 2688643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 3160224 |
|---|
| End bp | 3162932 |
|---|
| Gene Length | 2709 bp |
|---|
| Protein Length | 902 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637127576 |
|---|
| Product | cytochrome c family protein |
|---|
| Protein accession | NP_953925 |
|---|
| Protein GI | 39997974 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01904] Geobacter sulfurreducens CxxxxCH...CXXCH domain
[TIGR01905] doubled CXXCH domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTGA ATGGAAGGAG TACTGCAGTG AGAAGGATCG TTTCGACGGT AGCGGCGCTG
GCACTGGCGC TCGTTCTCGG CGGCCATGCC CGGGCCGCCT CCACCTGTAC TGACTGCCAC
GGCATGCCCC CCATCGATGC GGCCTACCGC AACATCACCA CCGGCGGGTT CAAGGGGAGT
CACCAGACCC ACCAGCCGGC CACGGCCACC GACTGTGCCG TCTGCCACGC CGGCAGCGCC
ACCTTCGCCA CGGACCACAT GAACGAGAAG GTGGAGCTCT CCTCCAACAT CAATGCATCT
CCCCTGGCGG CGACTTACAG CAAGGGGGTC TTCTTCAACC AGACCTCCAA TCCGGTCATG
GGGACCTGCT CCAACGTCAA CTGCCATTTC GAGAAGACCA CCCCCACCTG GGCGGGAGCC
AAGCTCGTCT CCCCCACGGA CTGCGGCGTC TGCCACGGCT CGGCCCCTGC CACCGGCAGC
CACCCGTCGC TTCTGGCCGC CGGCAAGAAG CACGGCGACT ACTACGGCAC CGGCACCGGT
TCCTGCGTCA AGTGCCACCC GGATCACACG GTGGAGGCCA AGCCCTTTGC CCATGCCACG
AGCGCCGGCA AGCGCCCCCT GTCGCTCCGC TTCACCGCGG CCCCCAACAA CGGCGGTACC
TACTCCAAGA CGGCCAATCT TACCTATCCC AACTACCTTC CGAGCCGCAA TCCCGCGCGG
GACGGTTCAT GCTCCGCCAT GTACTGCCAC AGCGACGGCA ACGGCGGCGC AGCCAGGGCC
ACCGCCACCT GGGGCGGGAC GCTTGCTGCC GACTGTACCG GCTGCCACGG GGGCAACGCC
GCTTCGGCCG CTCCCATCAT CACCGGGCTC CACGCCCAGC ACGTGGACGC CGCAGCGGTC
CTCGGAACCA CCATCGAATG CGCCCGCTGC CACAACGGAC CGGTCAGCGC CGGCAATGAC
CGTGCGGTTA CCGGTGTGGC TGCCCACGTT GACGGCGTCA AAACGGTCGC CTTTGTGGGG
GGCGGCACCT GGAATGCCAC CGCCAAAACC TGTTCCGCCA CTACCTGTCA CTCCTCGGGC
AAGGCCACGG CTCCCCAGCC GCCAACCCCC GCTTGGACCG GTGCGGCCAT GGGGTGCAAC
GGCTGCCACG GTATCGTCGG CGGCACCTTC ACGAGCATCG CCGGCGAGCC CAACTACGCC
AACGCGGGCG CCGGCCTCCC CCTGGCCAAC AGCCACCGCA AGCACGTGGT CATCGCCGCC
GACTGCGGCG TCTGCCACGC CAATACCTCC ACCACCGGAA CTGCCATCAA AGCCGGCTCG
ACGATTCATA CCAACGGCGT TATCAACGTG AACTTCAATA CCCAGGCCGG CGCCACCGCC
ACCTGGGCCG CGTCCACCAA GACCTGCTCC AATATTTCGT GCCACGGCAC CGCCAATCCG
GTCTGGGGCG GAACCCTGCC GGCCGATTGT ACGGGCTGCC ACGGTGGCGG CGTAACGAGC
GCTGCACCCA TCGCCACCCT CAATCACCCG ACCCACCTCT CCCGCGCCTA TGGTCCCGGG
AACTACCTGG GGACGGCCAC GGCCGCCTGC CAGAGCTGCC ACGACTACAG CGCCACCCAG
CCCGACGCGA AGCACGCCGA CGGCACTGTC CAGGTCCTGA ACGCCGCGGG CAGCGCCTGC
GTCAAATGCC ACCCCGGTGC GCTCCCCGCC TGGACCAGCA CCACCCGCAT CGCCTGCACC
TCGTGCCATG CGGCGACTCC GTCGGTTCTC GCCAACGGCG TGGCCGCCCC CTACAAGGCC
AACTACGCTA CCAGGGGCCA CGGTCAGGCG GCCGTCACCT ACAACGCCAG TCGTGCCTGC
GAGAGCTGCC ACGACGCCAA TGGCGCCCAT ATTTCCGGTG TCCTGGGCGA TGCCGTGCGG
CTCGCGCTCC CCAACGACAA CACCCAGTGC GCCTCGTGCC ATAATGACCC GGCCAAGGTG
CCGACCCCCA ACGAGCAGAA CGTGCTTTCC CATGTGACCG TCGCCGGGGG CGCGGCCACG
AGCCTCTGCA AATCGTGCCA CGATCCCCAC GGCACCACGA ACCTGGCCAT GGTCCGCACC
TCCATCGGAG GCAAGACCAT CACCTTCACC AACCTGTCCA GCGGATTCGT GAAGACCGTG
GCTCCCTATG ACGGACTCTG CCAGGTGTGC CACACCGCCA CCGGCCACTT CCGCTCCGGT
CAGGCAATGG ACGGACACCC GACCAAAAAC TGCCTCTCCT GCCACGGTCA CAAGGGTGGC
GCCTACGCCT TCGCGCCGGC CACCGCCTGC GACTCGTGCC ACGGCTACCC GCCGGTCCCG
GCCGGGTTCG TCACCGGCAC GGGCAACTAC GCGGCCGGCA AGCCTGAAGA CTATGCGGGG
GGGGGCGGCG CTCACGTAGT GGCCAAACAC GTTCCCAAAA CCGCAGTCCC GGCGGAGGGT
TGGGCCAACT GCACCATGTG TCACGGCAAC GGCGCGCTCA ACCCGGCCAC CCACCAGATG
GCCCTGCCGG TAATCCCGAG CAAGATCACC GTGGATGTCC GCGACCGGCT CAAGTTCAAC
CATAGTCTGC CGCTCGGACC CCAGCAGTAC GACGGCAAGC TTCTTGACGG CGGTGCCAAC
GCCACCGGCA GCTGCTTCAA CGTGAACTGC CACTTCAAGC CGTCCAGGAA GTGGAGCACC
TCCAGGTAG
|
|---|
| Protein sequence | MDVNGRSTAV RRIVSTVAAL ALALVLGGHA RAASTCTDCH GMPPIDAAYR NITTGGFKGS
HQTHQPATAT DCAVCHAGSA TFATDHMNEK VELSSNINAS PLAATYSKGV FFNQTSNPVM
GTCSNVNCHF EKTTPTWAGA KLVSPTDCGV CHGSAPATGS HPSLLAAGKK HGDYYGTGTG
SCVKCHPDHT VEAKPFAHAT SAGKRPLSLR FTAAPNNGGT YSKTANLTYP NYLPSRNPAR
DGSCSAMYCH SDGNGGAARA TATWGGTLAA DCTGCHGGNA ASAAPIITGL HAQHVDAAAV
LGTTIECARC HNGPVSAGND RAVTGVAAHV DGVKTVAFVG GGTWNATAKT CSATTCHSSG
KATAPQPPTP AWTGAAMGCN GCHGIVGGTF TSIAGEPNYA NAGAGLPLAN SHRKHVVIAA
DCGVCHANTS TTGTAIKAGS TIHTNGVINV NFNTQAGATA TWAASTKTCS NISCHGTANP
VWGGTLPADC TGCHGGGVTS AAPIATLNHP THLSRAYGPG NYLGTATAAC QSCHDYSATQ
PDAKHADGTV QVLNAAGSAC VKCHPGALPA WTSTTRIACT SCHAATPSVL ANGVAAPYKA
NYATRGHGQA AVTYNASRAC ESCHDANGAH ISGVLGDAVR LALPNDNTQC ASCHNDPAKV
PTPNEQNVLS HVTVAGGAAT SLCKSCHDPH GTTNLAMVRT SIGGKTITFT NLSSGFVKTV
APYDGLCQVC HTATGHFRSG QAMDGHPTKN CLSCHGHKGG AYAFAPATAC DSCHGYPPVP
AGFVTGTGNY AAGKPEDYAG GGGAHVVAKH VPKTAVPAEG WANCTMCHGN GALNPATHQM
ALPVIPSKIT VDVRDRLKFN HSLPLGPQQY DGKLLDGGAN ATGSCFNVNC HFKPSRKWST
SR
|
|---|
| |