| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2622 |
|---|
| Symbol | |
|---|
| ID | 2686079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 2892888 |
|---|
| End bp | 2895026 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637127312 |
|---|
| Product | HAMP domain/GAF domain/HD domain-containing protein |
|---|
| Protein accession | NP_953667 |
|---|
| Protein GI | 39997716 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2206] HD-GYP domain |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCTC TTCGAGTAAA AATTCTCGGC ATGATAACCC TGATCGTCGT GGTGATCGTT
GCGACGTTCG GATACCTGGA ATATCGCAAC CAGCAGCGTA CCATCACCCG CATTTCGGCA
CGCAACGCCC AGATCCTCGC CACCACCATC CAGAACAGTA TCGAAAACGT CATGATGAGC
GGGCAATCAG ACGAGGTGAC CCGCATCCTG ACGCGCCTCA AGGCGCACGA AGCCATCAAC
AGCCTCACCA TCTTCGACGA AAACGGCCGC ATCCTCAACT CCTCCGACAA GCGCGAAATC
GGCGGCCAAG TGGATGTGCA GGAACTGGAG GCCTACCGCA AGGGAAACGC CATCCACCTG
CACAGCGATG GCGCCCACCA GCAGTTTCAC AGCATCTCCC TCATTTACAA CAAGCCTGCC
TGCCAGGGAT GCCACGACGC CGGCCAGGCC ATTCTCGGCG CCCTCGAGAT CGAGCTTCCC
ATAGACTACC TCCAGGAGGA TCTGGCCAAG GGCAAGAGTT TTGCCCTGAC TTCGACCCTG
TTCATGGTCC TGCTGATCTT CGTCACCATA TCGCTCTTTC TCCACGCCTA CGTGAACCGC
CCCCTGAAGA CCATCATTGC GTCAATGCAG CGGGTGGAGC ACGGCGACTT CAATGTGCGG
AGCGATATTT CCAGCAGCGA CGACATGATG GCGCTGTCCG ACAACTTCAA CATGATGGTG
AACAAGCTCA AGTACTACAT GGAAACCACC ATCAGCCACG AGCGTGAATT GGCCCGGGCC
CAGTCCAAGT TGTCCCACCA CCACGAAATG CACATCATGA ACCAGAAGCT GGAGGAGCAG
CTCAGTGAGA TCGAGAACCT GAACGTCAGC ATGGAAGAGC GGATCGAGGA GATCGAAGAG
GCGAACTACA AAATAGCCGA CCTGGCCAGC GAACTGGAGG ACAAGAACAC CAACCTCGAG
CAGGCCGTCG CGAGGCTTTC GACTCTCTAC AAGGTGGGTC TCGCCGTCAA CTCGACCATG
GAGCCCGAGC GGCTCTTCAA CCTGATCGTG AAGACCACGG TCGACACCCT CCGCGCCCAG
ATCGGCTACA TCATCCTCTA CTCGCCCCGG GAGAAGAATC TGCAGGTGAC GACGCTGCTG
GGCCACACCA TCCCGGAGGG CTCGACGACA ACGCTGCCCA TGAAGCAGTC GAGCGTATCC
ACCTGGGTCA TCGAGAATCG CCGACCGCTC CTCATCACCA CCATGGACGA ATGGCCCCAG
TTCGACCGGT ACAGCTCCCT GGGATACGAA CGCAGAACCC TCATTTGCGC CCCGCTCCAG
ATCAAGGACG AAATCATCGG CACCATTACG GTGGTGAACA AGGACGACAA CTCCACCTAC
ACCATCCAGG AACTGGAACT GCTCTCCACC ATCGCCGCCC AGGCGAGCAT CGCCATCAAG
AACGCCCAGC TCTACGACGA GCAGCAGGCA ACCTATCTTC ACACCATCCA GGCGCTGGTT
TCCGCCATCG AGGCGAGCGA CAGCTATACC CGCGGCCACT CGGAGCGGGT GACCCGTTAC
TCCACGGAGC TGGCGCGCAA GCTGCGCCTT TCCGCCGATC GCATCAAGGT GATCGAACGG
GCCGCTATCC TGCACGACAT CGGCAAGATC GGCATCGACC TGAGCCTGCT CCACAAGGAA
GGCAAACTCT CGCCGGACGA AATCCGCGAC CTTCAACAGC ATCCGGTGAT CGGCATGAAG
ATCCTGGAGC CGATCGACTT TCTCCAGGAT GTGCGCCAGT GCATCGGCCA GCACCACGAG
CGGTACGACG GCCGCGGCTA CCCGAACCGC CTCGGCCGGG AGGAGCAGTT GCTCGAATCC
CGCATCCTCG CCGTGGCCGA TGCCTTCGAC GCCATGACCT CCGATCGTCC CTACCGCAAG
GCCCTGCCGG TGGATCTGGC GGTGCGGGAA TTGATCGACA ACGTGGGCAC TCAATTCGAC
CCCGAACTGG TACCGCCCTT CGTCGAACTC CTGGAATCGG GCATCCTGGG CATCACCTTC
CAGCGGAAAG AGCCGGGAGC CTCCTGCCCT GTCCGCGATC ATCGGCGCGC GGAGCGCAAG
GTGGTCGCCA TCAGCGAATA CGGCCACCGC ACCAACTGA
|
|---|
| Protein sequence | MNSLRVKILG MITLIVVVIV ATFGYLEYRN QQRTITRISA RNAQILATTI QNSIENVMMS
GQSDEVTRIL TRLKAHEAIN SLTIFDENGR ILNSSDKREI GGQVDVQELE AYRKGNAIHL
HSDGAHQQFH SISLIYNKPA CQGCHDAGQA ILGALEIELP IDYLQEDLAK GKSFALTSTL
FMVLLIFVTI SLFLHAYVNR PLKTIIASMQ RVEHGDFNVR SDISSSDDMM ALSDNFNMMV
NKLKYYMETT ISHERELARA QSKLSHHHEM HIMNQKLEEQ LSEIENLNVS MEERIEEIEE
ANYKIADLAS ELEDKNTNLE QAVARLSTLY KVGLAVNSTM EPERLFNLIV KTTVDTLRAQ
IGYIILYSPR EKNLQVTTLL GHTIPEGSTT TLPMKQSSVS TWVIENRRPL LITTMDEWPQ
FDRYSSLGYE RRTLICAPLQ IKDEIIGTIT VVNKDDNSTY TIQELELLST IAAQASIAIK
NAQLYDEQQA TYLHTIQALV SAIEASDSYT RGHSERVTRY STELARKLRL SADRIKVIER
AAILHDIGKI GIDLSLLHKE GKLSPDEIRD LQQHPVIGMK ILEPIDFLQD VRQCIGQHHE
RYDGRGYPNR LGREEQLLES RILAVADAFD AMTSDRPYRK ALPVDLAVRE LIDNVGTQFD
PELVPPFVEL LESGILGITF QRKEPGASCP VRDHRRAERK VVAISEYGHR TN
|
|---|
| |