Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU2187 |
Symbol | |
ID | 2685754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 2396719 |
End bp | 2399238 |
Gene Length | 2520 bp |
Protein Length | 839 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637126880 |
Product | ABC transporter, permease protein |
Protein accession | NP_953236 |
Protein GI | 39997285 |
COG category | [M] Cell wall/membrane/envelope biogenesis [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.424379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCTGT GGCGCGCCGG CGCACGACAC CTGCTGCGAC ATCCACTGCT CGCCTTCCTG TCGGTCATCG GCGTGGCCCT GGGGGTGGCG GTGGTCACTG CCGTGGACGT GGCCAACGAG AGTGCGCACC GGGCCTTTCA GCTGGCTGCC GAGGCCGCGG CGGGGAAAGC CAGCCACCAG ATCGTGGGCG GGCCCCGGGG GCTCGACGAG GATCTTTACC GCATTATCCG AGTCGAGCGC GGGGTCCGGC CGGCAGCTCC CGTGGTGGAA GGAGTGGTCT CGGTCACGGG CCGTCCCGGC ACCACTCTTC ACCTGATCGG CATCGATCCC CTGGTTGAGG CCCCCTTTCG CTCCCATACC GCCCCGGTCG GGGGCCGCGT CGATCTGGCG GCCCTCATGG GAACGCCGGC AACGGGCCTG CTCCTGCGGG AGACGGCGGA ACGTGTCGGC GCGGCAGTGG GCAAGCCTCT CCGGCTCGAC GTGGGTGGCG TTTCCCGTTC CGTGGTGCTG GTCGGCTATC TGGAGGCCGG CGATGAACTG GCCCGCCAGG GGCTGGCATC GGTGCTGGTG ACCGACATTG CCACGGCCCA GGAACTTCTG GGCATGACGG GGCGGCTCTC CCGCATCGAC CTGATCCTGG CCGACGGGAA AGGGGTGGGC GCCTTGCCTC CGGGGGCCAC GCTCATCCCG GCCGGTGCCC GGGCCGGAGC AATGGACCGG ATGACCCGGG CGTTCCGCCT CAACCTCACC GCCCTCAGTT TCCTGGCCCT GCTGGTGGGG ATGTTCCTCA TCTACAACGC CACCACCTTT GCCGTGGTCC GCCGGCGGCG CCTGATTGGG CTCATGCGGG CCATGGGGGT CACCCGCAGG GAAATCTTCG GCCAGGTCTG CGTCGAAGCC CTGCTGACCG GCCTCATCGG CACCGCCGCG GGGATCGCTC TCGGCCTCGC CCTGGGGGAA GTGCTCACCC GTCTCGTAAC CCGCACCATC AATGATCTCT ACTTCGTACT GGAGGTGCAG CAGGTTGCGC TTTCGGCGAC AACCCTGGCC AAGGGGTGTC TTCTGGGCAT CGCGGCCACT GTGGCGGCAG CGGTTCCGCC CGCCCTGGAG GCGACTGCTG CGCCGCCGCG CGCCGTCCTG TCCCGCTCAT TCATCGAGGC CCGTACCCGT CGGCACGTAC CCCGTGCGGC CCTTGCCGGG CTGGCGGCCA TGCTCGGGGG CGCACTGCTC CTGGCAACGG GATTCGGCGG GCTCGCGGCG GGGTTCACGG GGCTTTTCGC GCTCATCCTC GGCTATGCCC TGACGGTTCC TTTCGGCACG GTCCTGGTGG CCCGCGCCAT GAAACCGCCC ATGGGGCTGC TCTTCGGCAA CCTGGGCCGC ATGGCCGCCC GGGGCGTCGT TGTTTCACTC TCCCGCACCG GCGTGGCCAC GGCTGCCCTG GTGGTGGCGG TGTCGGCCAC CATTGGCGTG GGGATCATGG TGGACAGCTT CCGCCACACC GTGCAGCAAT GGCTGGCCGG GCGGCTGAAG GCCGATATCT ACGTGACCAC CGCCGGCACC GGCACGGGGC GCGACAAACC GCCGCTGGAC CCGGCCCTGG TGGAGCGGCT CCGTTTGGTT CCTGGCGCAG CCGCGGTCAG TACCACCCGG AGGATCACCA TCCAGTCGGC CGGAGGGGAG ACCGATCTGC TGGTGCTCGG CATCCCCCGG CGTACCTTTG ACGGTTTTCG CCTTAAGGAG GGAACGCCGG ACCGGGCCTG GCAGTCCTTC AGCAGCGGCG AAGGGATCAT CGTGTCCGAG CCCTTCGCTT TCCGTCACCG TCTCGGACTC GGCGATGCCG TGCGGCTGCG GACCGACCGG GGCGAACGGG ACTTCACCGT GGCCGGCGTG TTCTACGATT ACGGCTCGGA CAGCGGTTTC GTGGCCATGG ACCGGGGCGC CTTCAACCGC TACTGGGACG ACCGGAGCGT GGACGGCATG GGGCTGTACG CGGCGCCGGG CATCTCCTCA GCGCAACTGG CCGAGGCGGT CCGCGCCCGC AGCGGCAGCG CCCGGGTCAG CATTATTTCC AGCCGAGAAC TGTATGAGGC ATCCGTGGCA GTGTTCGACC GGACCTTCGT CATCACCGGC GTGCTGCGCC TGCTGACCGT GGTGGTGGCC GTGGTCGGCA TCCTTTCGGC CCTCATGGCC ATGCAGGTGG AGCGGGCGCG TGAGCTGGCC GTGCTGCGGG CCATGGGACT CACTCCGGCC GAACTCTGGG GGGTGGTCTG CGGGGAAACC GGGCTCGTGG GGCTCGCGGC GGGGCTTCTG TCGCTGCCGC TCGGCATCCT TCAGGCCGCT GTCCTCATCT ATGCCATTAA CCGCCGGTCC TTCGGCTGGA CAATGGAATT CTCCCTGTCC CCGTCGATCT TCTGGCAGGC CATCGTGCTG GCGGTCGGCG CCGCGATCGT GGCGGGGATC GTGCCCGCCC TGGCTACCGC TCGCGTCCCC CCGGCCCTTG CCTTCAAGGA GAATGAGTAG
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Protein sequence | MILWRAGARH LLRHPLLAFL SVIGVALGVA VVTAVDVANE SAHRAFQLAA EAAAGKASHQ IVGGPRGLDE DLYRIIRVER GVRPAAPVVE GVVSVTGRPG TTLHLIGIDP LVEAPFRSHT APVGGRVDLA ALMGTPATGL LLRETAERVG AAVGKPLRLD VGGVSRSVVL VGYLEAGDEL ARQGLASVLV TDIATAQELL GMTGRLSRID LILADGKGVG ALPPGATLIP AGARAGAMDR MTRAFRLNLT ALSFLALLVG MFLIYNATTF AVVRRRRLIG LMRAMGVTRR EIFGQVCVEA LLTGLIGTAA GIALGLALGE VLTRLVTRTI NDLYFVLEVQ QVALSATTLA KGCLLGIAAT VAAAVPPALE ATAAPPRAVL SRSFIEARTR RHVPRAALAG LAAMLGGALL LATGFGGLAA GFTGLFALIL GYALTVPFGT VLVARAMKPP MGLLFGNLGR MAARGVVVSL SRTGVATAAL VVAVSATIGV GIMVDSFRHT VQQWLAGRLK ADIYVTTAGT GTGRDKPPLD PALVERLRLV PGAAAVSTTR RITIQSAGGE TDLLVLGIPR RTFDGFRLKE GTPDRAWQSF SSGEGIIVSE PFAFRHRLGL GDAVRLRTDR GERDFTVAGV FYDYGSDSGF VAMDRGAFNR YWDDRSVDGM GLYAAPGISS AQLAEAVRAR SGSARVSIIS SRELYEASVA VFDRTFVITG VLRLLTVVVA VVGILSALMA MQVERARELA VLRAMGLTPA ELWGVVCGET GLVGLAAGLL SLPLGILQAA VLIYAINRRS FGWTMEFSLS PSIFWQAIVL AVGAAIVAGI VPALATARVP PALAFKENE
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