Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU1778 |
Symbol | |
ID | 2686519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 1940793 |
End bp | 1943261 |
Gene Length | 2469 bp |
Protein Length | 822 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637126458 |
Product | type II secretion system protein, putative |
Protein accession | NP_952828 |
Protein GI | 39996877 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0505418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAACCA TAGCGAACAT GGCCATTGCC GCGGTAGTAC TGACTTTTCT CGCCGGGTGC ACTGCCGGCC TGACCGCGTT CAACAAGGCT GAAAAGCTTG AAGAGGAAGG TAAGCTTGAC GAGGCGGTCA TGAAGTTTGC CGAGGCTGCT TCAACCAATC CTCAACAGAC CGAGTACCGC ATGAGACTCC TCAAGGCGAG CGAAAAAGCC GCGTTCGAGC ACCTCAAAAA TGGGGATACG GCCTATGAGC AGCAGCTGCT AGACGAAGCT CTGCGGGAAT ATCAGTCGGC AGTTTCGCTC AACCCTGCTC TGGCGCGGGC AAAGCAGCGC AGCGACGAGT TGATCCGGGT GCGTAATTCA CTGACCTACT ATCGCGAAGG ACTCGAGTTT GAAAAATCGA ACAAGCCTCG CGAAGCCCTT CAGGCCTATC GCAAGGCTCT GGATCTCAAT CCCGGGAACA AGGAAATAAA AGAAGCCCTT GAAAAGCTGC TCCAGACCAG ACGCACCAAG CTGGAAGGCT TTGAACTCAA TCTCAAATCG ACCAAGCCGA TAACCCTTAA GTTCAAGGAA GCTAAGCTCA AGGACGTTTT CTATATTCTG TCCCAACTTT CAGGGATTAA TTTCATCTTT GACGAGGGCG TTAAGGAACA AAACGTCACC GTTTTCCTTG AAAATGCAAC TTTCAATCAA GCTCTCGATC TACTTACGAG CATGAACAAG CTGGGACGCA AAGTCCTCAA TGAGAGCACT ATTCTCATTT TCCCCAAGAC ACCGGAAAAG GCCAAACAGT ATGAAGATCT GATGGTGAAG ACGTTCTATC TGAACAGCCT TGATGCCAAG AAGGCCGTCA ACCTTTTGCG GACGATGCTT CAGGTCAAGA AGATCTACGT GAACGAGGAA CTGAATGCCC TCGTCATCAG GGATAACCCG GAACTGATCG ATGTGGCGGG GAAGATTCTC GAAGCCAACG ATGTGCCCGA TGCCGAAGTG TTGCTGGAAG TTGAGGTTAT TCAGGTTTCG AAAAACAATT CAGAGTTGTT CGGCCTGGGA CTGAGCCGGT ATGCCGTATC CCTCAACGCC CGCACTCCCG GGTCGGGTGG CGATTTCTTT TCTGATACCT TTGATCCGAA GGTAACCACA ACGTCGAACG ATACGACCAC GGTGACCACT ACCCAGGTGA AGAACCTCCT CAATCTCTTC AACTGGAATG GTTACCAGGG GTTCCTGACC GTTCCCAGCG CCACGTACAA TTTCAGCAAA CAGTTGTCCA ACGCTGAGGT CCTGTCGAAT CCGAAGATTC GCGTCAAAAA CCGGGAAAAG TCCAAGTTTA CCGTGGGCAC GAGGGTGCCT ATCACCACTA CGTCCAGTAC CGGTTCCGTC GGCGGGGTTA CCGTGAACGT CCAGTACGTG GACGTCGGGG TCAAACTCAA TGCGGAGCCG GTGATTCAGT TGAACAACGA GGTCACCATA AAGCTTGGGG TCGAGGTCAG TTCCATTATC GGCGAGAAGA CAGTCGGCAG CGGCGATGCC ATTAGTTCGG TCGTGACCAT CGGCACCCGC AACGTGGATA CGGTTCTCAA CTTGAAAGAC GGGGAAACCA GCATCATCGG CGGTCTCATC GAGGACACAA AAAGCAAGAG CAAGCAGAAG ATCTGGCTCC TGGGCGATAT TCCCCTCATT GGCAGCCTGC TGTCCAGCCA CAATGACAGG TATGATAAGA GTGAGCTGGT GCTTGCCATT ACGCCGCGCA TTGTCCGGGC AGTATCCGTC CCCGAGGCTG ATGTAGCGGC CTTCTGGTCG GGCAAGGAAG ATGACCCGAC AGCCGTTAAG CCGTTTTCTT CCTTTGAACT GGAACCCGAC TTCGCAGCCC AACCGGCCGG CGCGCCGGCC AAAGGCGCGC CCGCAGTGCC TTCGGCCAAG CCCGGCAGCG CGGCTCCTGC CGGGCAGCCG GCGACAGCGG CCGACGCACC GGCCGCTGTG GTGCAACCGG CTGCGACACC GGCTGCCGCA TCAGCAGCAG GAGTTCAAGC TAGCGTGGCA CCTGTTCAGC CCGCCATGCG CGGAAGCCTC AATATCGCCG CACCGGCCGG CGTTGATCTT GGCGGTCAGT TCAAGGTTGA AGTCAAGGTG ACTGACGTCA AAGGGCTTGC CAAGGCACCG TTCACTCTGC TCTATGACCC CATTTTCATC GAGTATGTCG GGGCGGCGGA AGGGAACTTT CTAAATCGGG ATGGCAAGCC GACGATCTTC AACGCACTGG CGGACAAAGC GGCTGGGCGA GTAGTCATCA CGATGGATCG CAGTGCTGCC GGTGAGGGGG TCGACGGCTC GGGAACGCTC CTAAGTGCCA CCTTCAAGGC AAAAAACAAG GGACCGGCCA GCCTCGGCCT CCAGAATGTA AAGTTCGTTG ACCAAGCGAA CAGGCCTCTG GATATAATTC CTTACAACAC GGTGGTTGAA GTCAAGTAG
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Protein sequence | MRTIANMAIA AVVLTFLAGC TAGLTAFNKA EKLEEEGKLD EAVMKFAEAA STNPQQTEYR MRLLKASEKA AFEHLKNGDT AYEQQLLDEA LREYQSAVSL NPALARAKQR SDELIRVRNS LTYYREGLEF EKSNKPREAL QAYRKALDLN PGNKEIKEAL EKLLQTRRTK LEGFELNLKS TKPITLKFKE AKLKDVFYIL SQLSGINFIF DEGVKEQNVT VFLENATFNQ ALDLLTSMNK LGRKVLNEST ILIFPKTPEK AKQYEDLMVK TFYLNSLDAK KAVNLLRTML QVKKIYVNEE LNALVIRDNP ELIDVAGKIL EANDVPDAEV LLEVEVIQVS KNNSELFGLG LSRYAVSLNA RTPGSGGDFF SDTFDPKVTT TSNDTTTVTT TQVKNLLNLF NWNGYQGFLT VPSATYNFSK QLSNAEVLSN PKIRVKNREK SKFTVGTRVP ITTTSSTGSV GGVTVNVQYV DVGVKLNAEP VIQLNNEVTI KLGVEVSSII GEKTVGSGDA ISSVVTIGTR NVDTVLNLKD GETSIIGGLI EDTKSKSKQK IWLLGDIPLI GSLLSSHNDR YDKSELVLAI TPRIVRAVSV PEADVAAFWS GKEDDPTAVK PFSSFELEPD FAAQPAGAPA KGAPAVPSAK PGSAAPAGQP ATAADAPAAV VQPAATPAAA SAAGVQASVA PVQPAMRGSL NIAAPAGVDL GGQFKVEVKV TDVKGLAKAP FTLLYDPIFI EYVGAAEGNF LNRDGKPTIF NALADKAAGR VVITMDRSAA GEGVDGSGTL LSATFKAKNK GPASLGLQNV KFVDQANRPL DIIPYNTVVE VK
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