| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1007 |
|---|
| Symbol | |
|---|
| ID | 2685743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 1086843 |
|---|
| End bp | 1088495 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637125677 |
|---|
| Product | GAF domain/HD domain-containing protein |
|---|
| Protein accession | NP_952061 |
|---|
| Protein GI | 39996110 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2206] HD-GYP domain |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCA CCTACACCGA ACTCATCGAG GGAAGCGAGC GATTGAGCGG GCTTACTGAT
GTGGACGAGG TAATCAAAGA CCTCTCCCGT CTGCTGCGCA AGCTCGTCAA GACCCGATGG
ATCGCCGTTT ATTTCTTCGA CCGGGAACGG AGGGACTTCG CCCCGGCCCG CAGCACGGGA
CTCCCTGCCA GCTTCCTTCC CGTGTTTCGC GAGATGCCGC TGGCTCCGGA CAAGATACCC
CTCCTGAAAA GCATGCTCCG CAAGCGGCAG CACCTGATGC TCACTGATCC CGGCTCCTCG
GACCTGCTCA CCCCGAAGCT CCGGAAACTC CTCCGGAACC TCTGCGTCCT GGCGGTCCCC
ATGGTGGTCA GGACCCAGGT CATCGGTGCC GTGTTCATGG CCCGGACTCG CGACAATCCT
CCCTTCTCCG ACGCTGAAAC CGCCATCATC CGCGACCTGG TCTCCCACGC GGCACTGGTG
GTTTCCCACA TGCAGCTCTT CGACGAGTCT CTGGACATGG CCCTGGACCT GGCGGGCCGT
ATCGACGTAA TCCTCACCAT CGACGAAATC AACAAGGCCA TCTCCTCTTC TCTTTCTCGG
GAAAGGATCA TGGAAACGGC CATGGCGCAG GTGGAGCGGA TTACCGGCTG CGAGTTCGTG
GCAATCCTCC AGGCGGAAAA CGGAGGGCTC AAGGTCATGT CGTCCCATGC CTCGGGGCTT
GAGATCCCCG CGGCCCTCCG CCCCGGTGCG CCCCTGTCGC TTGCTGGCTG TACCGCCTGG
ACTGCCTTCC GCACCGGCCG CAGCGCGAGC ATTGCCGACT TGGCCGATAC CAGGAAGCCC
GGCACCGTTT CCCGGACCCT TCTGGCCGCC GGCATCCGGT CGCTCCTGGC CATTCCCCTC
ATGTCGCGCG ACCAGGTCAA GGGCGTGCTG CTGCTGGGCG ACACGGAACC CGACAAGTTC
GCCCGGGGCG AGACCTTTAC TATTGAGAAG ATCGCGTCAC AGATGGCGGT GGCACTGGAA
AACGCCCGGC TTTATGAAGA CATGCGCAGC CTGTTCTTCA ACACCGTGTC CAGCCTGGCC
AATGCCATCG ATGCCAAGAG TCCCTGGACC AAGGGACACT CGGAACGGGT CATGCACATT
TCGACCCGCA TCGCCAAGGA GATGGGGCTT TCGGAACAGG AAGTGGAACA GATCCGGCTC
GGGGGGCTGC TGCACGATAT CGGCAAGATC GGCGTCATCG AGGCGCTTCT GGAGAAGCCG
GCGCTCCTTT CTGAGGACGA ATTCCCTCCC ATGAGGCTCC ATCCGGAAAA GGGGGTTGCC
ATCCTGGCCC CCATCGCCCA GCTGAAGGAG GTGCTCCCCG TTATCCTCTA CCACCATGAA
CGGCTGGACG GCTCGGGCTA CCCCGAGGGG CTCACCGGTG ATCACATCCC CCTGGGGGCA
CGCATCGTGG CGGTGGCCGA CTCCTTCGAC GCCATGGTGT CGGAGCGGCC CTACAAGCAT
GCCAACACCC TCACGGAGGC CCTGGAAGAG CTTCGTGCCG GCGCCGGCAG CCAGTTCGAT
CCGGTCGTGG TCGAATGCTT CGCCAGGTAT GTCAAGCGGG TAATGGGCAA AGGGGGCGGC
AACACGCCCG GTGTGCTCTG GGAAGCTGCC TGA
|
|---|
| Protein sequence | MTGTYTELIE GSERLSGLTD VDEVIKDLSR LLRKLVKTRW IAVYFFDRER RDFAPARSTG
LPASFLPVFR EMPLAPDKIP LLKSMLRKRQ HLMLTDPGSS DLLTPKLRKL LRNLCVLAVP
MVVRTQVIGA VFMARTRDNP PFSDAETAII RDLVSHAALV VSHMQLFDES LDMALDLAGR
IDVILTIDEI NKAISSSLSR ERIMETAMAQ VERITGCEFV AILQAENGGL KVMSSHASGL
EIPAALRPGA PLSLAGCTAW TAFRTGRSAS IADLADTRKP GTVSRTLLAA GIRSLLAIPL
MSRDQVKGVL LLGDTEPDKF ARGETFTIEK IASQMAVALE NARLYEDMRS LFFNTVSSLA
NAIDAKSPWT KGHSERVMHI STRIAKEMGL SEQEVEQIRL GGLLHDIGKI GVIEALLEKP
ALLSEDEFPP MRLHPEKGVA ILAPIAQLKE VLPVILYHHE RLDGSGYPEG LTGDHIPLGA
RIVAVADSFD AMVSERPYKH ANTLTEALEE LRAGAGSQFD PVVVECFARY VKRVMGKGGG
NTPGVLWEAA
|
|---|
| |