| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU0371 |
|---|
| Symbol | |
|---|
| ID | 2686696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 403252 |
|---|
| End bp | 405816 |
|---|
| Gene Length | 2565 bp |
|---|
| Protein Length | 854 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637125036 |
|---|
| Product | carbohydrate phosphorylase family protein |
|---|
| Protein accession | NP_951430 |
|---|
| Protein GI | 39995479 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0058] Glucan phosphorylase |
|---|
| TIGRFAM ID | [TIGR02094] alpha-glucan phosphorylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTCA CCAAGAGAAT CCACCGTTTC ACCGTTGTCC CTTCCCTGTC GGGGGAACTC
GCCATCCTCC AGACCCTGGC CTACAATCTC TGGTGGACGT GGGAGCCTGA TGCGGTGGAA
CTCTTCAAGC GGCTCGACAT CGACCTGTGG CAGCAGACTC GCCACAACCC GGTGGAGATG
CTCGGCATCC TCCAGCAAAC CACCCTTGAG CGCCTTGTGG CGGACGAGGG CTTCATGGCC
CAGCTCAAGC GGGTCGAGGA AAAATACCAC GGCTACATGA CCGGCAAGAC GTGGTTCGAT
CGGACCTGGA ACGGCGAGCG TCCCCTGCGG GTTGCCTATT TCTCCATGGA GTTCGGTCTC
CACGAATCGG TTCCCACCTA CTCCGGCGGC CTGGGGGTGC TGGCGGGGGA TCATCTCAAG
TCGGCCAGCG ACCTGGGAAT CCCCCTGGTG GGGATCGGCC TCCTCTACCG CCAGGGCTAC
TTCCGCCAGT ATCTCAATAT CGAAGGGTGG CAGCAGGAGC TCTACCCCGA GAACGACTTC
TACAACCTCC CCCTCAAACT CCAGCGGGAC GAGGAAGGGC AACCGGTCAC CATCGAGCTC
GATCTGGCCG GCCGCAAGGT CCACGTCCAG ATCTGGAAGG TGCAGGTGGG CCGGATTCCC
CTCTATCTCC TGGACACCAA CATGGAGGAG AACGACCCGC TGGACCGGGA GATCACGGCC
CAGCTCTACG GCGGGGACCA GGACATGCGC ATCCGCCAGG AGATTCTGCT GGGCATCGGC
GGCATCCGGG CGTTGAACCG CCTCGGCATC GATCCCAATG TCTGCCACAT GAACGAGGGG
CACGCCGCCT TCCTGGCCCT GGAGCGGACC AAGCTCCTCA TGGAAAAGCA CGGCCTGCGC
TTCCCGGAGG CCATGGAAGC GGTCCGCGCC GGCACCATCT TTACGACCCA TACTCCCGTG
GACGCGGGTA TCGACCATTT CCCCGCAGAC CTGCTGGAAC GCTATCTGGG ACGCTATTAC
CGGTTCCTGG GGCTCTCCCG GGATGAATTC CTCTCCCTGG GACGCCAGCT GCCGAAAAAT
CCCCACGAAT CGTTCTGCAT GGCGGTGCTG GCCCTGCGGC TGGCCAATCA CGCCAACGGC
GTCAGCCAGC TTCACGGCGA GGTCTCGCGC AAGATGTGGA AAAACCTCTG GCCCGAGCTG
CCTGACGAGC ACATCCCCAT CACCTCCGTC ACCAACGGCG TCCACACCAA GACCTGGCTC
TCGGTGGAGA TGGCCGGGCT CCTCACCCGC TACCTGGGCA ACCGCTGGCG GGAAGACCCC
ACCGACTCGC TCCTCTGGAA GCGGGTCGCC AACATTCCCG ACTCCGAACT CTGGCGGACT
CACGAACGGT GCCGCGAACG GCTGGTGGTC TTTGCCCGGC GCCGGCTCAA GGATCACCTG
CACCAGGTGG GCGCCACGGC CAAGGAGATC GCCCAGGCCG ACGAGGTGCT GGACCCGGAA
GCCCTGACCA TCGGGTTCGC GCGGCGCTTC GCCACCTACA AGCGGGGGAC CCTGCTCTTC
CGGGACCTGG ACCGGCTCGC CCGCATCCTC AACGACGCCG ACCGCCCCGT GCAGATCATC
TTCTCGGGCA AGGCCCATCC CCACGACGTG GAGGGCAAGG AACTGATCCG CCGCATCTTC
CAGCACTCCC TGGAAGCGCG ATTCCACAAC CGGATCGTGT TCATCGAGGA CTATGACATG
GCCGTGGCCC GGCACTTGGT CCAGGGGGTC GACGTCTGGC TCAACACCCC CCTGCGCCCC
CTGGAGGCCA GCGGCACCAG CGGCATGAAG GTGGCGTTCA ACGGCGGCCT CAACATGAGC
GTTCTGGACG GCTGGTGGCC CGAGGGATAC CGGGGGAACA ACGGCTGGGC TATCGGCAAG
GGTGAGGTCT ACGACGACAT CGACTTCCAG AACGAGGTGG AGAGCCGCGC CATCTACGAC
CTGCTGGAAA AGGAGGTCAT CCCCCTCTTC TATGACCGGG GTCCCGACGG CATCCCCCGC
GGCTGGCTCG CCTGCATGAA AGCGAGCCTC CAGACCCTGT GCCCGGTCTT CAGCACCGAG
CGGATGGTCA AGGAGTATGC CGAGCGGATG TACCTCCCCT CCTTCGAGGA GTGGCGCACC
CTGGCCGGCG ACGGTCTGGC CCGGGCCGTG GATCTGGCCC GCTGGAAGGG TGAGATGCAC
CGGTCCTGGC ACCAAGTGAA AGTGATTTCG GTGGAGGCCC CCGCCCCCGA GGAGGTGCCC
CTGGGCGCGC CCATTCCGGT GACTGCCCGT ATTGCCCTGG GCGACATCGT CCCGGACCGG
GTGATTGTGG AGACCTACTG CGGCGTCCTC GACTCCCGGG GCAACATCGT GGGAGGCGAG
TTGATTCCGC TGGACCACGC GGAAGAGGAA GGGGGAGGCT CCCACCGCTT CACGGGTGAC
ATCGAAACCC GGTTCTGCGG CAGGCACGGT TTCATGATCC GGGTCATGCC CCGCCATCCC
GAACTGGGAC CGGTTTACGA ACAGGGTCTG CTCGTCTGGG GCTGA
|
|---|
| Protein sequence | MDFTKRIHRF TVVPSLSGEL AILQTLAYNL WWTWEPDAVE LFKRLDIDLW QQTRHNPVEM
LGILQQTTLE RLVADEGFMA QLKRVEEKYH GYMTGKTWFD RTWNGERPLR VAYFSMEFGL
HESVPTYSGG LGVLAGDHLK SASDLGIPLV GIGLLYRQGY FRQYLNIEGW QQELYPENDF
YNLPLKLQRD EEGQPVTIEL DLAGRKVHVQ IWKVQVGRIP LYLLDTNMEE NDPLDREITA
QLYGGDQDMR IRQEILLGIG GIRALNRLGI DPNVCHMNEG HAAFLALERT KLLMEKHGLR
FPEAMEAVRA GTIFTTHTPV DAGIDHFPAD LLERYLGRYY RFLGLSRDEF LSLGRQLPKN
PHESFCMAVL ALRLANHANG VSQLHGEVSR KMWKNLWPEL PDEHIPITSV TNGVHTKTWL
SVEMAGLLTR YLGNRWREDP TDSLLWKRVA NIPDSELWRT HERCRERLVV FARRRLKDHL
HQVGATAKEI AQADEVLDPE ALTIGFARRF ATYKRGTLLF RDLDRLARIL NDADRPVQII
FSGKAHPHDV EGKELIRRIF QHSLEARFHN RIVFIEDYDM AVARHLVQGV DVWLNTPLRP
LEASGTSGMK VAFNGGLNMS VLDGWWPEGY RGNNGWAIGK GEVYDDIDFQ NEVESRAIYD
LLEKEVIPLF YDRGPDGIPR GWLACMKASL QTLCPVFSTE RMVKEYAERM YLPSFEEWRT
LAGDGLARAV DLARWKGEMH RSWHQVKVIS VEAPAPEEVP LGAPIPVTAR IALGDIVPDR
VIVETYCGVL DSRGNIVGGE LIPLDHAEEE GGGSHRFTGD IETRFCGRHG FMIRVMPRHP
ELGPVYEQGL LVWG
|
|---|
| |