| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_1634 |
|---|
| Symbol | |
|---|
| ID | 8136965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 1903648 |
|---|
| End bp | 1905264 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644869247 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_003021447 |
|---|
| Protein GI | 253700258 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 179 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGACA GGAAAAGGGT CTTCTGGTTC ATACTGCTTA GGCTGCTGGT GGTGTCCGTC
TTTTTGGTCA CCACCTTGTA TCTTGACATA CATACCTACG ACGTAAGCGG CGACGTTGCC
CCTAAAGTGC TGATACGGCT TATCGTCGCC ACCTACCTTT TCTCATTCGG CTCGCTGGCG
GTGCTGTACT ACTCCCGGCA GGCCCGCACC CTCGCCTACG CCCAGATCGT CTGGGATCTG
ATCCTGGTCA CGGTGATGAT CCTGATCTCG GGCGGGGTGA CCTCGCCCTA CGCCTTTCTC
TATTTTCTCT CGATCATCAG CGCCAGCGCG CTTTTGGCCC GCTCGCAGGC TTACTACACC
GCCTCGCTCT GCGTCATCCT CTACGGGGCG ATCCTGGATT TCCAGTATTA CGGCAAGCTC
GCCCCGCTGG GGCTCTCCCC TTACCCGGCG CAGCAGTACG GGGCCGCGTA CCTCTTCTAT
CTGATTTTTC TCTACTGCGC CGCGTTTTTC CTCACCGCGA TTCTGGCCGG GCACCTCTCC
GAGAGGGCGA GGCGCTCCGA AAGCGCCTTC CAGGAGAAGG CGATCGACTA CGAGGAACTG
GAGCGGCTGA ACTCGTGCAT CGTCTCGACC ATCGACTCGG GGCTCCTCAC CATCAACCAG
GAGGGGAGGA TCCGCGTCTT CAACCGTTAC ATGGAACATC TGACCGGGCT CTCACAGCAG
CAGGCCTACG ACCGCCCGCT CTCCGAGGCG ATCGCGGGGC TCTCCCCCTT CAACGGTTGC
TTCTTCGAAG GGGGACAGGG CGAGTTCCGG CACCAGGGGG GCGACGGGCG GCAACTGCTC
CTCTCCTTCA AGTCTGTGCC GCTCACCGAT AAAGACGGCG CCACCGTCGG TGCGATCTTC
GACATCCACG ACCTGACCGA GATGAAGCGT CTCGCTGCGG AATTGAAACG AGCGGACCGG
CTCGCCGCAG TCGGGGAGCT TTCCGCCCGC ATGGCGCATG AGATCAGGAA TCCCCTTGCC
GCCATCAGCG GTTCGGTGCA ATTGGTGGCG CTCAGGCCTT GTGTCGACGA GAAGGACAAA
CGCCTGTTCT CCATCATCCT GAGAGAGACC GACCGCCTGG ACGGACTCTT GCGCGACTTC
CTCTTCTACG CCAAACCGAC ACAGCCCACG AAGATCCCCC TCAAACTGCG CCAGGTGATC
GCCGACCTCT GCTCGCTTTT ATCCACCGAC CCGCGCCTCG ATGGGGTGAC CATCGAGAAC
CGGGTGCCCG ATGACCTGGT TGTGGTCTTC GACAAGGACC AGTGTTCACA GGTCTTCTGG
AACCTGGTCG TGAACAGCGC CGAGGCGATA GCCGGCGAAG GGACCATCGT CATCGAGGCG
AGCGCCGTTC GCAGCGGAGC GAAGGGTGAG GCCCGGATCA GCGTCAGGGA CAGCGGCTCC
GGGATGAGCC AGGGGGAGGT TAAGCGGGTC TTCGAGCCCT TCTTCACCAC CAAGAAGGGG
GGGACGGGCC TCGGGCTCGC AACCGTCTAC CGCATCGTCG AGACCCACGG AGGACGCATG
GTCGTGGACA GCGCCGAAGG GGCGGGGACC ACGGTCACCC TCTACCTTCC CGCGTGA
|
|---|
| Protein sequence | MIDRKRVFWF ILLRLLVVSV FLVTTLYLDI HTYDVSGDVA PKVLIRLIVA TYLFSFGSLA
VLYYSRQART LAYAQIVWDL ILVTVMILIS GGVTSPYAFL YFLSIISASA LLARSQAYYT
ASLCVILYGA ILDFQYYGKL APLGLSPYPA QQYGAAYLFY LIFLYCAAFF LTAILAGHLS
ERARRSESAF QEKAIDYEEL ERLNSCIVST IDSGLLTINQ EGRIRVFNRY MEHLTGLSQQ
QAYDRPLSEA IAGLSPFNGC FFEGGQGEFR HQGGDGRQLL LSFKSVPLTD KDGATVGAIF
DIHDLTEMKR LAAELKRADR LAAVGELSAR MAHEIRNPLA AISGSVQLVA LRPCVDEKDK
RLFSIILRET DRLDGLLRDF LFYAKPTQPT KIPLKLRQVI ADLCSLLSTD PRLDGVTIEN
RVPDDLVVVF DKDQCSQVFW NLVVNSAEAI AGEGTIVIEA SAVRSGAKGE ARISVRDSGS
GMSQGEVKRV FEPFFTTKKG GTGLGLATVY RIVETHGGRM VVDSAEGAGT TVTLYLPA
|
|---|
| |