| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0262 |
|---|
| Symbol | |
|---|
| ID | 8135569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 318622 |
|---|
| End bp | 321063 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644867883 |
|---|
| Product | homocysteine S-methyltransferase |
|---|
| Protein accession | YP_003020105 |
|---|
| Protein GI | 253698916 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase
[TIGR02370] methyltransferase cognate corrinoid proteins, Methanosarcina family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.00180962 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGT CTTTTATGCA GGCGGTTAAA GAGCGGGTGC TGGTTTTGGA CGGCGCCATG
GGGACCATGC TGCAGGAGCG CGGGCTGAAG CCGGGCCAGT CCCCGGAGGA GATGAACCTC
ACCGCGGCCG AGGTCGTCGC CGGGGTGCAC CAGGCTTATC TGGACGCCGG CGCCGACATC
ATCGTCACCA ACACCTTCGG GGGCACGAAG GCGAAGCTGG AGCACTACGG CCTGGGCGAC
CAGGTGGCGC GCATCAACGC CGAGGCGGTG AGGATCGCGC GCGAGGTCGC AGGCGAAAAG
GCCTACGTGG CAGGTTCCAT AGGCCCCACC GGCCGCTTCC TGGAGCCGGT CGGCGACATG
AGCTTCGACG AGGCGGTCTC GCTCTTCCGC GAGCAGGCGC AGGCGCTCGT CGACGCCGGC
TGCGACCTGA TCAGCTTCGA AACCTTCCTG GACATCAAGG AGATCCGCGC CGGGGTCATC
GCGGTGCGCG AGATCTCTCA GGAGATCCCG GTCATCGCCA TGCTCACCTT CGAGGAGAAG
GGGATAAGCG TTCTCGGCAC CCCGCCGCAA GCCGCCGCCA TCACACTGGA GGCGGTGGGC
GCGACCATCG TCGGCTCCAA CTGCGGCTTG GGCCCTGATG GGATCTACCA GATCCTCTCA
GACATGAGGG ACGTCACTGC GCTGCCGCTC ATCTCCCAGG CGAACGCGGG GCTCCCGATC
CTCAAGGATG GCGTCACCAT CTTCCCGGCG ACCCCGGACG AGATGACCGC CTACCACGAC
CGGCTGATCG AGCTCGGCGT CCGCATCATA GGCGGCTGCT GCGGCACCAC CCCCGCCCAT
ATCTCCGCCA TCAAGAAGGC GCTGGCCGCG AAACAGGCGC CGTTCGCACC CAAGAAGGAG
GACGGCACCA CCTGGCTCTC CAGCCGCGGC AGCTTCGCCG CGGTCGGCGC CGCGCATCCG
GTGGCGCTCA TCGGCGAGCG GATCAACCCG ACCGGGAAGA AGCTCTATTC CCAGGAGCTC
AGGGAAGCCA AGGTGAGCTA CATCCGCCGC GAGGCGCTGG AGCAGGCCGG GCTCGGAGCG
ACGCTTCTCG ACGTGAACGT CGGCACCCCG GGGATCGACG AGCCGGCCGC CATGGAGCGC
GCCGTCTTCT GCATCACCGG CGCGGTGCAG ACACCGCTGG TGCTCGACTC CTCCTCCCCC
GAGGCGCTGG AGGCTGGGCT TAAGGCAGCC GACGGCAAGG TGCTCGTAAA CTCCGTGAAC
GGCGAAGAGA AGAGCCTCGC AGCCGTCTTG CCGCTCGCGA AGAAATACGG CGCGGCGCTG
GTCTGCCTCA CCCTCGACGA GGCGGGTATT CCCGCCGAGG CCGCGGGGCG CGTCGCCGTC
GCCGAGAAGA TAGCCGCTGC CGCGCTGGCC GCTGGCGTTA AGCGAAGCGA CCTCGTGGTC
GATTGCCTAA CACTCACGGT GAGCGCCGAG CCCAAGGGGG CGCTGGTTGC GCTGGAGGCG
GTGCGCCAGG TGAGCGCGCT TTCGCTCAAT ACGACGCTCG GCGTTTCCAA CATCTCCTTC
GGCCTTCCCT GCCGCCCCCT CATCTCCTCC ACCTTCTTCT CCATGGCCAT AGCCGCGGGG
CTCACCTCGG CAATCGTCAA CGTGAAGGAG GCGCCGATGA TGGCTGCCTG GAGAAGTTCC
ATGGTGCTCT TGGAAAAGGA CGTCAACGCG GCCGGCTACA TCGAGGCTTA CAAAGGGCAG
GCGGTCGGCG CCACCGTGGA GCCCGCCGCG GCCCAAGGTG CTGCCGTGGC CCGGGCCGCG
GCCGTCGAGC CGGAAGGTGT GCGCGGGCGC CTCTCCAAGG CGGTCATCAA CGGCGAGGCG
GACAACGTGG TGGCGCTGGT GGAAGAGGCG CTCTCCGAAG GGCTGACCCC GATGCAGATC
AGCTCCGAGG CGCTCCTCGT TGGGCTCGAC GAGGTGGGAA GGCGCTTCGG CTCCGGCGAG
TTCTTCCTGC CGCAGGTGAT GGTCTCCGCC GACACCATGA AGACCGCCTT CGCCCGATTG
AAGATGGAGC TCTCCACCGG CGGTTTGCAG AGCATCGGCA AGATCCTGAT GGCGACCGTC
GAGGGGGACA TCCACGACAT CGGCAAGAAC ATCCTGGTTA CCCTCCTGGA GAACAACGGC
TTCGAGGTGA TCGACCTGGG CAAGAACGTC CCGGCCGACC GCATCCTGTA CGAGGCTCGC
GCCCACCAGG TGGACGCGGT CGGGCTCTCC GCGCTGATGA CGACGACCAT GGCGCAGATG
GACAAGGTGG TCAAGCTTTT GAAGGCCGAG GGGGTGAAAA GCTTCACCAT GGTCGGCGGG
GCCGTGGTCA CCCAGGAATA CGCCGACGAG ATCGGCGCCG ACCTCTACGC CAAGGACGCC
ATGGAGGCTG TGGCGCGCGT CAAGAAACTG CTGGCAAAAT AA
|
|---|
| Protein sequence | MKMSFMQAVK ERVLVLDGAM GTMLQERGLK PGQSPEEMNL TAAEVVAGVH QAYLDAGADI
IVTNTFGGTK AKLEHYGLGD QVARINAEAV RIAREVAGEK AYVAGSIGPT GRFLEPVGDM
SFDEAVSLFR EQAQALVDAG CDLISFETFL DIKEIRAGVI AVREISQEIP VIAMLTFEEK
GISVLGTPPQ AAAITLEAVG ATIVGSNCGL GPDGIYQILS DMRDVTALPL ISQANAGLPI
LKDGVTIFPA TPDEMTAYHD RLIELGVRII GGCCGTTPAH ISAIKKALAA KQAPFAPKKE
DGTTWLSSRG SFAAVGAAHP VALIGERINP TGKKLYSQEL REAKVSYIRR EALEQAGLGA
TLLDVNVGTP GIDEPAAMER AVFCITGAVQ TPLVLDSSSP EALEAGLKAA DGKVLVNSVN
GEEKSLAAVL PLAKKYGAAL VCLTLDEAGI PAEAAGRVAV AEKIAAAALA AGVKRSDLVV
DCLTLTVSAE PKGALVALEA VRQVSALSLN TTLGVSNISF GLPCRPLISS TFFSMAIAAG
LTSAIVNVKE APMMAAWRSS MVLLEKDVNA AGYIEAYKGQ AVGATVEPAA AQGAAVARAA
AVEPEGVRGR LSKAVINGEA DNVVALVEEA LSEGLTPMQI SSEALLVGLD EVGRRFGSGE
FFLPQVMVSA DTMKTAFARL KMELSTGGLQ SIGKILMATV EGDIHDIGKN ILVTLLENNG
FEVIDLGKNV PADRILYEAR AHQVDAVGLS ALMTTTMAQM DKVVKLLKAE GVKSFTMVGG
AVVTQEYADE IGADLYAKDA MEAVARVKKL LAK
|
|---|
| |