Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_5618 |
Symbol | |
ID | 5673945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 6829553 |
End bp | 6833704 |
Gene Length | 4152 bp |
Protein Length | 1383 aa |
Translation table | 11 |
GC content | 78% |
IMG OID | 641244471 |
Product | ATP-dependent transcription regulator LuxR |
Protein accession | YP_001509875 |
Protein GI | 158317367 |
COG category | [K] Transcription |
COG ID | [COG2909] ATP-dependent transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.586723 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCCGGCG CGGACGAACC GGACGATCGT TTCGGAACGC CCGGGTCTGC CGTGCCCCGG GCCGGTGGGG GAGACGGGGC CGCCGCGCGG CCGCGCATCC AGCCGTCGCC GGCCGGCGAC CTGCCGGTGG TGGGTACGAG GCTGGTACCC CCACGTCCGG TCGTCCCGCA TGTGACCCGG CCGCGGCTGC TGGCGCTGCT CGACGAGGCG GTCGACCGGC CGCTGACCGT GGTGTGCGCA CCGGCCGGCG CCGGCAAGAC GATGGCGCTC GCCGACTGGG CGCGATCGGG CCGGCCCGCG CACCCGGTGG TCTGGCTGCG CGTCGACCCG ATGCTCGGAC GGCGTACCGC GCGCGCCGAG CACCCCGGTG GCGATCCGGC GGCCAGCGGG CCGCCGTCGC CGTCGCCGTC GCAGCCGGGG TCGCAGCCGC GGTCGCCTTC GTCCGCGCTG TCGTTGTTGC CGTTGGCGCG GAGCACGACG CGGTGGCCTG GTCCGCCCGT GTCCCTGTGG TCGCAGATCC TGCGCGGGCT CACCCGGGAC GCCGGCCTGC CCCCTGGGGA CCGTCTCGCG CACCTGGTCG CCGCGGACGC CTGGATCTGC CCTGAGCGCT TCCGGCGGGA GCTGGTCAAC CAGCTCGCCG AGCTGCCGGC CCCGGCGGTG CTGGTCCTCG ACGACGCGCA CCTCGTCCGG GATCCCGATG ATCTCGCCGG ACTGGAGCTG CTCGCGAGCG AGGGCGAGGG CCACCTGCGC ATCGTCCTGT CGGGGCGGGC GCCGATTCTG CGCGTGCACC GGCTGCGCGC CGAGGGCAGG GTCACCGAGA TCGGCCCGGC GGAGCTGGCC TTCACCACGG CGGAGACCGT CGAACTGCTC GCCGCCCACG GCCTGCGCGT CCCGCCCGGC GCGGCGGCCC AGCTGCGGCG CGCGACGGAG GGCTGGGCGG TCGGCCTGCG GCTGGCCGCG GCGTGCGCGG TGTCGAGCGG AGCCCGGAGG CCGGCCCCCG GCGTGCCCGC CGGCCGGGAC GAGCAGTGGG CGCCGGCCCC GCCGGTCCCC GGCCCGGCTG ATGTGGTCCC GGGCCGCGAC GCCGAGTGTG CGGGCAGCGG CGTCCCGCCG GCCGAGCTCG ACCCGTCCCG CGCGGGGAGC GGCGCTCTGC CGGCCGAGCT CGACCCGTCC CGCGCTGCGC GGGCGGCGAT CGCCGAGTTC CTGCACGCGG AGGTGCTGGA GGAGTACCCG GAGCCCGTCC GACGGTTCCT GCTCCGGACG AGCGTGCTGG AGCGGATCAG TGCCCCGCTC GCCCACGCGG TCTCCGCGGT GGCGCCCGCG TCCGCCCAGA CATCCGCGCA CCTGCTCGGT GAGCTCGCGC GCCCGGGCGG CTTCCTCGTC CGGCTGTTGG ACGGGCCGGC TGCGACAGCT CACCCGGGTG CCGGCGACCA CCCGGACGAC GGGGTGGGCG GTCCGCTCCG GGCGGCCGTC GCCACGTTGC CGGACGGCCG CCCGGAGTAT CGCCTCACCC AGGAGGCCAC GGCTGAGACC ACGCAGGAGT GGTACCGGTT CCATCGGATG TTCGCGTCGA TGCTGCGCGG TGTGCTCGTG CGTGATCCGG AGGAGGACCC CCGCGAGCTC AACCTCCGCG CCGCCCTCTG GTTCGCCGCG AACGACCGCA CACCCGACGC CGCCCGTCAC GCGTCGCGGG CTGGTGACTG GTGGTATCTC GCCTGTCTGC TCGTCGACGG CCCGGCGCTG GTGGACGTCC TGTTCGGACG CTCACCCGAG CTCGATGCGC TGGTCGCCGG GCTGCCTGCC GCGGCGGCGG GGCTGTCGGC CGAGTGCGAT CTCGTCCTGG CCGTCGCACA GCTGCGCTCC GGCCGGCTGG AGGCCGGTTC GGCCAGCCTG TCCTCCGCGC GGGCGCAGCT GCCCGCGGCG GGGTCGGGCC CGGCGGCCGC CCGCCGCCGG ACGCTCGTCG ACCGGATCGA CATCGTGGAG GCGTACCGTG CCGAGCTTGC CGGGGAACCG GCGGCGATGA TCGCCGCGGC CCGGCGGCTG CAGCGTTCCG GGCCGCCGGG TGGCGCGCCC GCCGGGACGG CACCGCGTGC GGGCGCCGCC GCCGGGCCGG CACGGGCATC CGGGGGCGAT CCGGACGCCG CGGCCGACCG GGCTGTGATC GACCGGGCTG GGGCCGAGCG GGCTGGGGCC GAGCGGGCTG GGGCCGAGCG GGCTGGGGCC GACCGGGCTC CGTCGAGGCC CGGTCGGGTG CCGGACGAGC GGGCCCGCGC GCTCGCGTTG TGCGCGCGGG GCCGGGGCGA GCTGTGGCTC GGCCGACTGG CCGTCGCCGC CGGCCTGCTG TGCGAGGGCG CCGAGGTGGC CCGGCGGGCC GGGCTCGGCG GCGTCGAGGT GTCCTGCCTG GGGGCACTCG CCCTCCAGTA CGCGCTGCGC GGCCGGCTGC GCCAGGCCGA GAGCCACCTG TACGCGGTGG TCGGCACGGC GGCCGACCCG TCCGGAGCAC TGGCCGGTCG CTCTGGTGCG CTGGCCGGCC TGCCCGATGC GGCGACCAGC GTCCCCGGCG GGGCACGGCC CGGCGAGCAG TGGGGCATCC CCGGACTGCC CGAGGCGTAT CTGGCCGCCG TGCTGGTTCA CCTGCAGCGT GCGGAGCCGG TCGAGGCCGA CCGGTGGCTG GGCGCGGCGC GGATGACGAT CACTGCCGCC CACCCCGCGT TCCTCGGCGG GATCGCCGCG ATCTGCGCCG CGCGGCTGCG CCTGCTCGGC GGATCACCCG ACGAGGTGCG CGCGGCCCGG CGGATGCTGA CCGTCGCCAG GACCGGCCCG ATGCCGCCGC TGTGCGCGGC GGCCAGGCGG GCGGCCGAGG CGGACCTGCT CGTCGCCGCG GGTAATCCGG AGGCGGCCCG CCGGCTGCTG CTGCGGGACG CCGACCGCGC GGCCCCGGAC CCGCAGACCC AGCTCGCGCT GGCGCGCTGC GCCCTGGCCT GCGCCGACGT TCCCGCGGCG GAGGAGGCAC TCGCCTCGCT GCTGCGGGCC GACGACGGCG GCGCGGGACT CGTCGCGGCG TGCGTGCTCG GCGCGGTCGC GGCCGCCCGG CGTGACGACC ACGCCCGCGC CGGTGGCTTG CTCGCCCGGG CGGTGGCGCT CGCCGCGGAC GAGGGCATGG CCGCGCCGTT CTTCGAGGCG GGGACGGAGG CGCTGGCGAT GGTGCTCGCC CATCCCGGGC TGACCGACGC CTATCCGGCC TTCGTCGCCG TCCTCACCCG GTCGGGGAGG TCCGGGCCGC GGCCGGTGCC CGTACCGTCG CGGTCCGCGG CGCAGGGGTC CGCGTCGCCT CGGCCTGCGG CGTCGAGGTC AGCGGCGGCG CACGCGGGGC CCGGCGCGTC GGGGCAGGGG AGCGCGCCGC CTCGGGCGGG CGCCCGGGCG CCCGCCTCGT CAGATGCTGG GTCGGCGGCC CGCACGGAGG AGCCAACGGA CCTGGTGGTC GGGCCCGATG TCGTCGTGCC GCAACCGGCT CCGCCGATGT CGCAGCGGTC CCGGACCACG GTGCCGGCCG CCGGGCCGGG GCGGCCGGCC GGGTCGTTCG CCGGCCCGGA TCCGGCCTGG CCCGGCGCGC CGGGAGCCCC GGACGGCGGC GGTCGGGACG TCCGCAACGG CGTCGACCGC GGCATCGGTA TCAACGACGG CGGCCTCAGC CGGGATGGCA ATGGCGTCGA TGGCGTCGGC AACCGCATCG TCGGCAACCG CATCGACGGC AACCGCGTCG ACGGCAACCG CGTAGGTGGC GACGGCTTCG GTGGTGGCGG CGGGGGCGTG GGTGGGCTCG GGTCGCCCCG GGGGCCGTGG CGCCCCGATG GCGCGCCCGC GGGCGGCCCC GGTGACGCCC GGCGCCGAGG CGGCCCCGGT GGTGGGAGCG CGGGTGGTGG GCCGCGCCCG GGGAGTGGGG AGCACCGGCC GGAGCCGGCC GAACGGCTCA GCGAGCGCGA GCTCGCGGTG CTCAGCTACC TGCCCACGAT GCTCACCACC GCGGAGATCG CGGCCGAGAT GTACGTGTCG GTGAACACCG TCAAGACGCA CCTCAAGAGC ATCTACCGCA AGCTGGATGT CGCCAGGCGC CGGGACGCCG TCCACCGTGC GCGTGCCCTT CACCTTTTGT GA
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Protein sequence | MAGADEPDDR FGTPGSAVPR AGGGDGAAAR PRIQPSPAGD LPVVGTRLVP PRPVVPHVTR PRLLALLDEA VDRPLTVVCA PAGAGKTMAL ADWARSGRPA HPVVWLRVDP MLGRRTARAE HPGGDPAASG PPSPSPSQPG SQPRSPSSAL SLLPLARSTT RWPGPPVSLW SQILRGLTRD AGLPPGDRLA HLVAADAWIC PERFRRELVN QLAELPAPAV LVLDDAHLVR DPDDLAGLEL LASEGEGHLR IVLSGRAPIL RVHRLRAEGR VTEIGPAELA FTTAETVELL AAHGLRVPPG AAAQLRRATE GWAVGLRLAA ACAVSSGARR PAPGVPAGRD EQWAPAPPVP GPADVVPGRD AECAGSGVPP AELDPSRAGS GALPAELDPS RAARAAIAEF LHAEVLEEYP EPVRRFLLRT SVLERISAPL AHAVSAVAPA SAQTSAHLLG ELARPGGFLV RLLDGPAATA HPGAGDHPDD GVGGPLRAAV ATLPDGRPEY RLTQEATAET TQEWYRFHRM FASMLRGVLV RDPEEDPREL NLRAALWFAA NDRTPDAARH ASRAGDWWYL ACLLVDGPAL VDVLFGRSPE LDALVAGLPA AAAGLSAECD LVLAVAQLRS GRLEAGSASL SSARAQLPAA GSGPAAARRR TLVDRIDIVE AYRAELAGEP AAMIAAARRL QRSGPPGGAP AGTAPRAGAA AGPARASGGD PDAAADRAVI DRAGAERAGA ERAGAERAGA DRAPSRPGRV PDERARALAL CARGRGELWL GRLAVAAGLL CEGAEVARRA GLGGVEVSCL GALALQYALR GRLRQAESHL YAVVGTAADP SGALAGRSGA LAGLPDAATS VPGGARPGEQ WGIPGLPEAY LAAVLVHLQR AEPVEADRWL GAARMTITAA HPAFLGGIAA ICAARLRLLG GSPDEVRAAR RMLTVARTGP MPPLCAAARR AAEADLLVAA GNPEAARRLL LRDADRAAPD PQTQLALARC ALACADVPAA EEALASLLRA DDGGAGLVAA CVLGAVAAAR RDDHARAGGL LARAVALAAD EGMAAPFFEA GTEALAMVLA HPGLTDAYPA FVAVLTRSGR SGPRPVPVPS RSAAQGSASP RPAASRSAAA HAGPGASGQG SAPPRAGARA PASSDAGSAA RTEEPTDLVV GPDVVVPQPA PPMSQRSRTT VPAAGPGRPA GSFAGPDPAW PGAPGAPDGG GRDVRNGVDR GIGINDGGLS RDGNGVDGVG NRIVGNRIDG NRVDGNRVGG DGFGGGGGGV GGLGSPRGPW RPDGAPAGGP GDARRRGGPG GGSAGGGPRP GSGEHRPEPA ERLSERELAV LSYLPTMLTT AEIAAEMYVS VNTVKTHLKS IYRKLDVARR RDAVHRARAL HLL
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