Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_5169 |
Symbol | ligC |
ID | 5673503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 6201061 |
End bp | 6202287 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641244023 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_001509433 |
Protein GI | 158316925 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00454515 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGAGG ATCGGCGGGT GGACCTGCCT GTGACACCGC CGGTGAAGCC GATGCTCGCC CGCGCGGCGC CGCAGATCCC CCCGGACATG CTGTATGAGC CGAAGTGGGA CGGCTTCCGC GCCCTGGTCT TCCGTGACGG GGCCGAGCTG GAGATCACCT CGCGCAACAC CCGGCCGATG ACCCGCTACT TCCCCGAGCT GGTCGAGGTG CTGCTCGCGG CACTGCCCGA CCGCTGCGTG CTTGACGGCG AGATCGTCGT CGTCGGCCCG AACGGACTGG ACTTCGAGGA GCTGTCGCAA CGGGTGCATC CGGCGACCAG CCGGGTGGCG AAGCTCGCGC TGGAGACCCC GGTCTCGTTC GTCGCGTTCG ACCTGCTGGC ACTCGGTGAC GAGGCGTTCA CGGACCAGCC GTTCGCCCGG CGGCGCGCCG TGCTCGAGGA GGTTCTCGCC GGCCACGCCG GCCCGGCTGC GCCCGGAACG GCACCGGCCC GGCGGATCCC GAGCGGGGTC TACCTCACGC CCTCGACCGG CGAGCTCGAC ATGGCCCGGC AGTGGTTCGA GCTCTACGAA GGCGCGGGGC TCGACGGGCT GGTCGCCAAG CCGCCGGACG GGGCGTACCA GCCGGACAAG CGCGCAATGT TCAAGATCAA ACATGACCGC ACCGCCGACT GCGTCGTGGC CGGCTACCGG CCGCACAAGA ACGATCCGGA GGCGGTCGGG TCGCTGCTGC TCGGGCTCTA CGCCGACCCC GCGGACGAGG CCGACCCCGA GAACGCGACG GACCCGGCTC GGGAAAGCCC GCTGCTGTCC GTCGGGGTCA CCTCGGCCTT CCCGATGGCG CGCCGGCGGG AGCTCGTCCG CGAGCTGGCC CATCTCGTGG TGCCGATCGA CTCCCACCCC TGGGCCCGCC AGGGCCCGGA GAACGCCGCG CAGCCGGGCG GCGACGCGGG CGAGGAACCG GCAGCGGCCG CGGGGCAGCC GGCGCGCACG CCCTGGGACG TCGGGGAGAG CCGGTGGGCC CGTGGCCGTG ACCTCTCGTT CGTCCCGCTG CGGCCCGAGC TGGTCGTCGA GGTGCGCTAC GACCACATGG AGGGACCGCG CTTCCGGCAC ACCACGCAGT TCGTCCGCTT CCGGCCCGAC CGTGACCCCG GCGGATGCAC CTACGCCCAG CTCGAGCGTC CGGTGCGGTT CGACATCGCC GACGTCCTGC GCATCCCGCC GGACTGA
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Protein sequence | MREDRRVDLP VTPPVKPMLA RAAPQIPPDM LYEPKWDGFR ALVFRDGAEL EITSRNTRPM TRYFPELVEV LLAALPDRCV LDGEIVVVGP NGLDFEELSQ RVHPATSRVA KLALETPVSF VAFDLLALGD EAFTDQPFAR RRAVLEEVLA GHAGPAAPGT APARRIPSGV YLTPSTGELD MARQWFELYE GAGLDGLVAK PPDGAYQPDK RAMFKIKHDR TADCVVAGYR PHKNDPEAVG SLLLGLYADP ADEADPENAT DPARESPLLS VGVTSAFPMA RRRELVRELA HLVVPIDSHP WARQGPENAA QPGGDAGEEP AAAAGQPART PWDVGESRWA RGRDLSFVPL RPELVVEVRY DHMEGPRFRH TTQFVRFRPD RDPGGCTYAQ LERPVRFDIA DVLRIPPD
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