| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4909 |
|---|
| Symbol | |
|---|
| ID | 5673249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5894247 |
|---|
| End bp | 5895902 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641243764 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001509180 |
|---|
| Protein GI | 158316672 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00241613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCA CTCTCGTCGC CACCGATCTG ACCGTGCTGC GGGGCGGCGC CGTCGTCCTC
GAAGGGGTGT CCCTGACCGT CGCCCCCGGT GATCGCCTCG GTGTGGTCGG GCCGAACGGC
GTCGGCAAGT CGACGCTGCT GCGGGCACTG GCCGGCCTGG TACGGCTCGA CGGTGGGCGG
GTCGAGCTCT CGCCGCCCAC CGCCGCGGTC GGGCTGCTGT CCCAGGAGCC CGACCGGCGC
CAGGACGAGA CACTGCGCGA GTACCTCGCC CGGCGCACCG GCGTCGCGGC GGCCCAGCAG
GCGCTGGACG CCGCGACCGA GGACCTGACG GCCGGCGTCG CCGGCGCGGA CGACGGGTAC
AGCCTGGCGC TGGAGCGATG GCTGGCGATC GGCGCCGCCG ACCTTGACGT CCGCGCCGAG
CAGGTAATCG CCGATCTCGG GCTGCCCGCC GCGGCGCTGG ACCGCCCGAC GGCGACGCTG
TCCGGCGGCC AGGCCGCGCG CGGCTCGCTC GCGAGCATCC TGCTGTCCCG CTTCGACATC
ACCCTGCTCG ACGAGCCGAC CAACGACCTG GACTTCGACG GTCTGGAGCG GCTCGAGCGG
TACGTCGAGC AGATGTCGGG CGCGCTGGTG GTGGTCAGCC ACGACCGGGA GTTCCTCGAC
CGGTCCATCG ACGCCGTCGC CGAGATCGAC CAGCATCAGC ACGGCGTCAC CCGGTACGCC
GGCGGCTGGG ACGCCTACCT GGAGGCCCGG GGCCTGGCCC GGCGCCAGGC CCGCGAGCGC
TTCGAGCGTT ACGCCGACCG GCGGGCCGGG CTGGTGGAGC AGGTCCAGCG CCAGCGTGAG
CAGTCGGTGC GCGGGGCCGT CCGGGCGAAG CGCCGGTCGC CGGACTCGGA CCGCTCGGCG
CGCGGCGCGC GGATCGAGGC CGCCACCAAG AGCGCCGGAC GGGTCCGCAC TCTGCAGACC
CAGCTCGACC GGATGGAGCG CGGCGACGAA GCGGTGGTCG AGCCGCGCAA GGAATGGCAG
CTGCGCATGT CGATCGCCGC CGCCCCCCGG TCGGGCGATG TGGTGGCCAC GCTGGACGGT
GCCGTCGTCG AGCGGTCCGG GTTCCAGCTC GGCCCGGTCG ACCTCACGGT CGCCTGGGCG
GACCGGATCG TGATCACCGG CCGCAACGGC GGCGGGAAGA GCACGCTGCT GGCCGCGCTG
CTCGGCCGCC AGCCGCTGAC CGCCGGCCGG CACTCGCTCG GCTCCGGCGT GCTCCTCGGC
GAGGTCGACC AGGCGCGCAC CCACTTCCGC GGCGAGTCGA CGGCGGCCGA CGTCGCCGAG
GCAGCGACCG GTTCCTCCCC GGCCGACGTC CGGACGCTGT TCGCGAAGTT CGGGCTGGGC
CCAGACCAGA TGACCAGGCC CGCCTCGTCC CTGTCGCCCG GCGAGCGGAC CAGGGCGGCG
CTCGCGCTCC TGCAGGGCGC CGGAGTGAAC TGCCTGGTCC TCGACGAACC GACGAACCAC
CTCGACCTGC CCGCGATCGA GCAGCTTGAG CAGGCCGTCG AGGGGTTCGA GGGGACGCTG
CTGCTGGTCA CCCACGATCG GCGGCTGCTG GAGGCCGTGC GGGTGACCCG GCGCCTGAGC
GTGGATGCCG GGCAGGTCAC CGAGGCCCCC GCGTGA
|
|---|
| Protein sequence | MSATLVATDL TVLRGGAVVL EGVSLTVAPG DRLGVVGPNG VGKSTLLRAL AGLVRLDGGR
VELSPPTAAV GLLSQEPDRR QDETLREYLA RRTGVAAAQQ ALDAATEDLT AGVAGADDGY
SLALERWLAI GAADLDVRAE QVIADLGLPA AALDRPTATL SGGQAARGSL ASILLSRFDI
TLLDEPTNDL DFDGLERLER YVEQMSGALV VVSHDREFLD RSIDAVAEID QHQHGVTRYA
GGWDAYLEAR GLARRQARER FERYADRRAG LVEQVQRQRE QSVRGAVRAK RRSPDSDRSA
RGARIEAATK SAGRVRTLQT QLDRMERGDE AVVEPRKEWQ LRMSIAAAPR SGDVVATLDG
AVVERSGFQL GPVDLTVAWA DRIVITGRNG GGKSTLLAAL LGRQPLTAGR HSLGSGVLLG
EVDQARTHFR GESTAADVAE AATGSSPADV RTLFAKFGLG PDQMTRPASS LSPGERTRAA
LALLQGAGVN CLVLDEPTNH LDLPAIEQLE QAVEGFEGTL LLVTHDRRLL EAVRVTRRLS
VDAGQVTEAP A
|
|---|
| |