| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4673 |
|---|
| Symbol | |
|---|
| ID | 5673015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 5581632 |
|---|
| End bp | 5582798 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641243530 |
|---|
| Product | L-rhamnose isomerase |
|---|
| Protein accession | YP_001508946 |
|---|
| Protein GI | 158316438 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4952] Predicted sugar isomerase |
|---|
| TIGRFAM ID | [TIGR02635] L-rhamnose isomerase, Streptomyces subtype |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.239648 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.828695 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGCAT TCAGCCAGAC GACAGAGGAC CTCGCTCGGC AGGAGATCGA GCTGCCCTCG
TGGGCGTTCG GGAACTCCGG GACGCGCTTC AAGGTGTTCA CGCAGCGTGG CATCCCGCGT
GATCCGTTCG AGAAGGTCGC CGACGCGGCG CAGGTGCACC GGTTGACCGG GCTCGCGCCG
TCGGTCGCGC TGCACATCCC CTGGGACGTC GTCGACGACT TCGACAAGCT GGGCGAACAC
GCGCGGGCCA ACGGCGTCCG GCTCGGGACG ATCAACACGA ACACGTTCCA GGACGACGAC
TACCTGCTCG GCAGCCTCTG TCACGTCGAC GAGCGCGTCC GGGCGAAGGC GGTCAGGCAC
GCCCTCGACT GCGTCGACAT CATGGACGCG ACGGGCAGCC GCGACCTGAA GATCTGGCTG
CCCGACGGGC TGAACTACCC CGGCCAGGCC GACCTGCGCG ACCGGCAGGA GCGGCTCGCC
GACGCCCTGG GCCAGATCTA CGCCCGGCTG GCGGCGCACC AGCGGCTCGT GCTCGAGTAC
AAGCTGTTCG AGCCGGCCTT CTACGCCACC GACGTCCCCG ACTGGGGCAC GGCCTACGTC
CACTGCCTCG CGCTCGGGGA ACGTGCCGTG GTGTGTCTGG ACACCGGCCA CCACGCCCCG
CACACCAACA TCGAGTTCAT CGTGATGCAG CTGCTCCGGC TGGGGCGGCT GGGGGCGTTC
GACTTCAACT CCCGCTTCTA CGCCGACGAC GACCTGATCG TCGGCGCCGC TGACCCCTTC
CAGCTGTTCC GGATCATGAC CGAGGTCGTC CGGGGCGGTG GCTACGACGA GGGCAGCGAG
GTGACCTTCA TGCTCGACCA GTGCCACAAC ATCGAGGCGA AGATCCCGGG CCAGATCCGG
TCCGTGCTCA ACGTGCAGGA GATGACGGCC CGCGCGCTGC TCGTCGACCG GGCGGCGCTC
GCCGAGGCTG AGCGCGCCGG GGACGTGCTG GCCGCGAACG CGGTCCTCAT GGACGCCTTC
TACACCGACG TGCGCGCAGA CCTCGCCGCC TGGCGTGAGT CGCGCGGGCT GCCCGCCGAC
CCCCTGGCGG CCTTCCAGTC CAGCGGTTAC GCCGAGCGCG TCGCGGCCGA GCGGGTCGGT
GGCACCCAGG CCGGGTGGGG CGCGTGA
|
|---|
| Protein sequence | MRAFSQTTED LARQEIELPS WAFGNSGTRF KVFTQRGIPR DPFEKVADAA QVHRLTGLAP
SVALHIPWDV VDDFDKLGEH ARANGVRLGT INTNTFQDDD YLLGSLCHVD ERVRAKAVRH
ALDCVDIMDA TGSRDLKIWL PDGLNYPGQA DLRDRQERLA DALGQIYARL AAHQRLVLEY
KLFEPAFYAT DVPDWGTAYV HCLALGERAV VCLDTGHHAP HTNIEFIVMQ LLRLGRLGAF
DFNSRFYADD DLIVGAADPF QLFRIMTEVV RGGGYDEGSE VTFMLDQCHN IEAKIPGQIR
SVLNVQEMTA RALLVDRAAL AEAERAGDVL AANAVLMDAF YTDVRADLAA WRESRGLPAD
PLAAFQSSGY AERVAAERVG GTQAGWGA
|
|---|
| |