| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4346 |
|---|
| Symbol | |
|---|
| ID | 5672701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5187882 |
|---|
| End bp | 5190974 |
|---|
| Gene Length | 3093 bp |
|---|
| Protein Length | 1030 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641243219 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001508636 |
|---|
| Protein GI | 158316128 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3899] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGAAC GGGGTTCGCT GGTCGGGCGC GACCGGGAAA TGGCCGCGGT GGGCGCCGCG
TTGGACCGGC TCGCCTCGGC GCGGCGCCGG CCAGGTTTCG ACTGGATGGA GATCCGTGGC
GAGCCCGGCA TCGGCAAGAG CCGCCTGATC GGCGAACTCA CCGAGCTTGC CGACGCCCGT
GGCCATCTCG TACTGCGGGG CCACGGCGCC GAGCTCGAAC AGGACATTCC GTTCAACGCC
CTCGTCGATG CGCTCGACGA CTACCTCGGC GCGGTGGATC CGGCGCGGTT GCGCCAGCTC
GGCGCTGACC GGCTCGACGA GCTGGCCGCC GTGTTTCCGG CGTTGCGCTC GCTCGGGACC
GTGCCGACCG GCAACACCTC CGAGATGCAG CGCTGGCAGA CCTACCGGGC GGCGCGAGCG
CTACTCGAGC TGCTCGCTGC CAACCGGCCG CTGGTACTGG CCCTGGACGA CCTGCACTGG
GCCGACACCG CGTCGGCCGA GCTCGTCGCT CACCTGCTCC GCCGGCCGCC GAAGGCGCGG
GTGCTGCTGG TCGTCGCGGT GCGGCCCCGC CAGGTGCCGA AGGCCCTGGC CGCGGCGTTG
TCGGCCGCGG CGGCGTCCGC CGTTGTCGCG ACCACCGACG GCCAAGCCGG GGCGAACTCA
CACGCGACCG TGGGCGTTCG ACTGGAGCTT GCCCCGCTGT CGCCCGAGGA CAGCGACTCG
CTGCTCAGTC CGGTGACCCG TGACCCGGCG CTCCGGCGTC GCTGGTATCG GGAGAGCGGC
GGTAACCCGT TCTACCTCGA ACAGCTTGCC CGCACCCCCA CCCGCCCGCT GTCCGCAGCT
GCCGGGCCGT CGTCCGTACC GCCGGCGTTG GCGGCCTCGA CCGGCCTCGA CGGACCGGAC
GACGTGCCGC CGGCGGTGAC GGCGGCGGTC GGCGCCGAGA TCGCACAGCT GCCCGAGGTC
GTACGGCGGT TCGCGCAGGG CGCTGCTGTC GCCGGCGAGG TGTTCGAGCC GGACCTGGCC
GCCGAGGCCG CCGCGCTCCC CGAAACCGAC GCCTTCGAAG CACTCGACGC GCTGGTCGCG
GCGGACGTGG TGCGACCGAC CGAGATGCCG CGCCGGTTCA CGTTCCGGCA TCCGATCGTG
CGCCACGCCA TCTACATGTC CGCCGGGCCG GGCTGGCGGA TCGCCGCTCA CGCACGAGCG
GCTGATGCGC TCGCCGCCCG GGGCGCCGCG GCCACCGCCC GAGCCCACCA CGTCGAGCGT
GCCGCCCGTC CCGGCGACGA GGCCGCGATC ACGCTGCTGA CCAAAGCGGC CGCGGCCAGC
CGGCTACGCG CGCCGGCAGC CGCCGCGCAC TGGTACGCCG CCGCGCTCAG ACTGCTACCG
GGCGGTGAGT CGAGCCCCGG CCAGAGTACC GACGTTGGCG TCGACGTGGA CGCGGACGGC
GGGTTGCGGC GACTGGAGCT GCTGTCCCGG CTGGCTGCCG CACTCGACGC GAGTTACCAG
CCGCAGCAGG CCCGCATGGT ACTCGACGAG ATCATGGGTC TGATTCCGCG GGAATTCGGT
GCCGAGCGGG CTCATCTCGT CGCGCTGCGC TCGGCGGTCG ACCATGTGCT GGGCCGGCAC
GGCGAGGCGC GTGCCCTGGT GTTGGACGCC GTGGCGAGCG CCGAACCGGG CACCCGAGAG
AGCTGTCTGC TGCGGCTTCA GCTTGCCATC GACCATTTCT ACACCGGTGA ATACGATGGG
ATGCGCCGCT GGCAGCAGGA AGCGCACGCG CTCGCTGGCA CGCTCGACGA CGCCCCGCTA
CTGGCCGCCT CGGCCGGACT GCTGGCGGGT GCCGAATACA TGGTCGGTGA CGTCCCGGCC
GCGATCGCCG AGGCCGCCGG CGCGGCACGC CGCTACGACC TGCTCTCGGA CGACCAGGTC
ACCCCGCACC TCGACAAGCT CGCGTGGCTG GGCTGGACCG AGGCGTTCCT CGAACGGTTC
ACCGACGCGC TACGCCACCT CGACCGGGTC GACGCGCTGG CGCTGCGCAA CGGCCGGGGC
AGCATCGGCA CACTGACGGC AGTCGCACGG TCGCTGGTCC TGACATCGCG GGGACGGTTG
CCGGAGGCCG CGGCGGCGGC CGAAGCCGCG GTGGAGGCGT GCCTGCTCAC CCCGCACCTG
CCCTTCCTGT CCTGGGCGCT GGCGGCGCGG TGTGCCGCGG CGACGCTGGC GGGAGACCTC
CCCGAGGCAC TGCGGTCGGG TGCGCAGGGA GCACGGGCGG CCAACCCGGA GACTGACGCC
GTCTCGGTGA TGGCCGGTTC CTATTTCGCG GAGGCGCTGG TCGAGGCCGG TGAGCCCGAC
CGCGCCGTCG ATGAACTCCT GGGTGCGGCC GGCGGCGCCG AGCTGCCGCG CATCGAAGCT
CCCATTCGGC CGTACTGGTA CGAGGTGCTC ACGCGGGCCG AACTGGCTCG CGGGATGCCG
GAGGCGGCCG CCGGCTGGGC GGTGCTCGCC GAGCGGACGG CCACCGACGC CGGCGGTGGG
CTCGCGGGAC GGAAGGCCTC GGCGATGCGA GCGAGAGCAG CCGTCGAGTT CGCCAGGGGA
CAGCCGTCGG CCGCCGCCGC GTCGGCGCTG GCCTCAGCCG CCGAGGCCGA GCGGGCCGGC
CTGCCGATCG AGCTCGGCCG GTCGCTGATC GTGGCTGGGC GGGCGCTGGC CGCCGACGGG
CAGAACGCGC GGGCGGTCAG CGAGCTGCGC CGGGCCGAGG CCCGACTCGA CGCGTGCGGT
GCCAACCGTC CCCGGGACGA GGCGGCCCGG CTGCTGCGCC AGCTCGGCGA GCGGGTGTCT
CGGGGCGGTC GACCGTCGAC GCGGACCCAA GCCCGGGCCG CTCAGACCCT GGCTCATCAC
CAGACCCAGA CGGTCGTCCT CAGCGTGGCA GCCGGCACGC TCAGCACCCG AGAACGTCAG
ATCGCCGAGC TGGTCGCCGC CGGCCAGACG AACCGCCAGA TCGCCGCCGC GCTGTTCGTC
AGCGAGAAGA CCGTCGAGAG CCATCTGACG AAGGTGCTCG CCAAGCTCGG CGTCCCCACC
CGAGCCGGTG TCGGTTCCGC GCTCCGTTCC TGA
|
|---|
| Protein sequence | MGERGSLVGR DREMAAVGAA LDRLASARRR PGFDWMEIRG EPGIGKSRLI GELTELADAR
GHLVLRGHGA ELEQDIPFNA LVDALDDYLG AVDPARLRQL GADRLDELAA VFPALRSLGT
VPTGNTSEMQ RWQTYRAARA LLELLAANRP LVLALDDLHW ADTASAELVA HLLRRPPKAR
VLLVVAVRPR QVPKALAAAL SAAAASAVVA TTDGQAGANS HATVGVRLEL APLSPEDSDS
LLSPVTRDPA LRRRWYRESG GNPFYLEQLA RTPTRPLSAA AGPSSVPPAL AASTGLDGPD
DVPPAVTAAV GAEIAQLPEV VRRFAQGAAV AGEVFEPDLA AEAAALPETD AFEALDALVA
ADVVRPTEMP RRFTFRHPIV RHAIYMSAGP GWRIAAHARA ADALAARGAA ATARAHHVER
AARPGDEAAI TLLTKAAAAS RLRAPAAAAH WYAAALRLLP GGESSPGQST DVGVDVDADG
GLRRLELLSR LAAALDASYQ PQQARMVLDE IMGLIPREFG AERAHLVALR SAVDHVLGRH
GEARALVLDA VASAEPGTRE SCLLRLQLAI DHFYTGEYDG MRRWQQEAHA LAGTLDDAPL
LAASAGLLAG AEYMVGDVPA AIAEAAGAAR RYDLLSDDQV TPHLDKLAWL GWTEAFLERF
TDALRHLDRV DALALRNGRG SIGTLTAVAR SLVLTSRGRL PEAAAAAEAA VEACLLTPHL
PFLSWALAAR CAAATLAGDL PEALRSGAQG ARAANPETDA VSVMAGSYFA EALVEAGEPD
RAVDELLGAA GGAELPRIEA PIRPYWYEVL TRAELARGMP EAAAGWAVLA ERTATDAGGG
LAGRKASAMR ARAAVEFARG QPSAAAASAL ASAAEAERAG LPIELGRSLI VAGRALAADG
QNARAVSELR RAEARLDACG ANRPRDEAAR LLRQLGERVS RGGRPSTRTQ ARAAQTLAHH
QTQTVVLSVA AGTLSTRERQ IAELVAAGQT NRQIAAALFV SEKTVESHLT KVLAKLGVPT
RAGVGSALRS
|
|---|
| |