| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4330 |
|---|
| Symbol | |
|---|
| ID | 5672685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5172760 |
|---|
| End bp | 5173554 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641243203 |
|---|
| Product | extracellular HAF |
|---|
| Protein accession | YP_001508620 |
|---|
| Protein GI | 158316112 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5563] Predicted integral membrane proteins containing uncharacterized repeats |
|---|
| TIGRFAM ID | [TIGR02913] probable extracellular repeat, HAF family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0114765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCGAC GGCGTCCCCA CCACGATCCC GGGCGCGATG CCGTGGCAGG TGAACGACAG
CGGCCAGGTC GTCGGCTCGC TGTACTCGGA CACCGGGCAG AACCGGGGGT TCGTCTGGGA
GAACGGGACG CTGACGACGC TGGAACCGAC CGCTCCCGGG CCGGACCGCT ACAGAGCTAT
GCCGGCTCGA TCAGCGCCGA CGGCACCGTG GTCGGCCTGA GCGGCACGAA CACTCCGCTG
GCGGACTACG GCCCGGCCGA GGGCGCCACC AAGCAGGCGC CAGCCGGCGA GGCGGGATCC
AAGGAGGCCG GCGACGTCTT CACGGACTAC CAGCCCCAGA TCCGCGCGAC GGTCTGGCGG
AACGGGACCG CGGTCGACCT GGGCACGCTC GGCGGCTCGT GGAGCAGCGC CGACCTGATC
AACGACCACG GTCAGGTCGC GGGGAGCAGC ACGACCGCGG ACAGGCACAG CCACGCGTTC
CTCTGGGAGA ACGGGCGGAT GCGCGACCTG GGCACGGCCG CCGGGCTCAC CGAGAGCTCG
GCTGTCGCGA TCAACGAGCG CGGCCAGGTG CTGGTCGAGA GCCACAAGCA GATCTCGTAC
CCGTTCGAGG GGGAGCCCAC GAGCACCGTC GGAATCTTCC CGGCGCACAC CGCCTCGACC
GCATACGTCT GGACCGCTGG CCAGCAGCAG GCGGTGACCG GGCTCGGCGG CGACACCTTC
TCCCCCGTCG ACCTCGCCGA CGACGGCACC GTCATCGGCT CGGCCATGAC GCCGGACGGC
GTGGACCGGC CCTGA
|
|---|
| Protein sequence | MARRRPHHDP GRDAVAGERQ RPGRRLAVLG HRAEPGVRLG ERDADDAGTD RSRAGPLQSY
AGSISADGTV VGLSGTNTPL ADYGPAEGAT KQAPAGEAGS KEAGDVFTDY QPQIRATVWR
NGTAVDLGTL GGSWSSADLI NDHGQVAGSS TTADRHSHAF LWENGRMRDL GTAAGLTESS
AVAINERGQV LVESHKQISY PFEGEPTSTV GIFPAHTAST AYVWTAGQQQ AVTGLGGDTF
SPVDLADDGT VIGSAMTPDG VDRP
|
|---|
| |