| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3973 |
|---|
| Symbol | |
|---|
| ID | 5672334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 4755153 |
|---|
| End bp | 4755722 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641242852 |
|---|
| Product | high-affinity nickel permease-like protein |
|---|
| Protein accession | YP_001508269 |
|---|
| Protein GI | 158315761 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3376] High-affinity nickel permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0271178 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.235405 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTACTTGC GGTACATCCC CAGGGGTCCC TCGACAACCT GGCTGCCGAC ACCTTCGATT
CCGACGAGGA GCTCGACGAG TTCCTCGCGT TCGCCTATGC CGAGCGTCGT CGCGACGTTG
CCTGAGCCGG CGCCGTGCAG CCTGTCGTTA CTTGACACCG ACATCGTCTC CCTGAGCCAC
AAGCGCAGGC TCGGCGGATC CGTGGCAACC CGCCTGATCG GCCGCCGGCC GTTGATTACG
TTCGTGACCT TTGGTGAGCT CGCCAAGTGG ACCGACCTGC GAGACTGGGG CAGTCGTCGA
CGTCAGGAAC TCGCCGACTG GCTCTCAGGA ATCCCTGTAC TGCCTGGCGA TGAAGCAGTT
GCCGCTACCT GGGGCATACT CTCCGCATCC GCCACCCTGT TCGGGCTCGG TTTCGACACT
GCCACCGAGG TCGGTATTCT TGCGCTGGCC GGCGGTGCGG CGGCGTTCGA CCTGCCCTTC
CACTCGATTC TGGTGCTGTC GATCCTGTTC GCCGCCGGTA TGTGCCTCAT GGACACGTCT
CTACGCGGCC GAGAACGTCG GTCGACGTGA
|
|---|
| Protein sequence | MYLRYIPRGP STTWLPTPSI PTRSSTSSSR SPMPSVVATL PEPAPCSLSL LDTDIVSLSH
KRRLGGSVAT RLIGRRPLIT FVTFGELAKW TDLRDWGSRR RQELADWLSG IPVLPGDEAV
AATWGILSAS ATLFGLGFDT ATEVGILALA GGAAAFDLPF HSILVLSILF AAGMCLMDTS
LRGRERRST
|
|---|
| |