Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3877 |
Symbol | |
ID | 5672240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 4606672 |
End bp | 4608693 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641242755 |
Product | ABC transporter related |
Protein accession | YP_001508175 |
Protein GI | 158315667 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0212257 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCGGTGG ACCGAGATCC CGACGCCATC AGTCTCGTTC CGGCGCAGCG AGAGGCCCAA TCCCGACCGC CCGAGGGGCC CGATCCGGGG ACCGGCGCAC CGGAGCAGGC CCGTGATCCG GTACTGACCT ATGGAAGGGA GGACGACGAC ACCCCACGCC CATGGAGCCG GCACGACCGG ACAATGGAAC GGACCGGCGT GCTCGCGATG ACCCGGCGGC TGCCAGGGCT GCTCCGGCTG GCCTGGTCAC TGGCCTGGGA GGCCGACCGG ATCGGCCTGG TCACCATGGT CGGCCTGCGA GTTCTGTCCG GGTTGGTCGA GGCCGCCGGC CTGCTCGCCG TCGCCGGCGC GCTGACGGCG GTGCTCAGCG AGGGGCCGAC CCCGCAGCGG CTGCACGACG CGATTCCCGC GCTGGTCCTC GTCGTCGGCG CCGGCGTTGT CCGGACGGCG ATCTCCCTGG TCACCAGCCT CCTGCAGAGC CGCTTCGGGC CCAGGGTCGA CCGCGTCTCG ATCGTGCGGC TACTCGACCT GGCCACCCGG ACGTCCGTGA TGTCCTTCGA CGACCCCCGG TTCGTCGACG ATCTTGATGC GGCCGAGCGG GGTGCCGCCA GCGGGCGTCA GCTCGTCGAC AACGCGGTCA ACGTGTTCAC CTCGGGGGTG CAGATGGTCG CCGCCGGCAG CGTCCTGGGT GTGTTGCACC CGCTCCTGCT GCCGCTGCTG GTGCTCTCGA TTCTGCCGGA CGGCTGGGCG ACGGCGCGTT CGGCGCGGCT GGCGCACGCC TCCTGGCTCG GGCGCATCCG CAAGATCCGG CGTCAGTTCA TGCTGCGCAA CCACATGACC GACCGGGACT GCTCCGCGGA GATCCGCTCG TTCGGCCTGA ACCGCTTCCT GCTGGACGAG TACATCGCGC TGGCCCGGGA GAACGAGGCC GAGCAGGTGC GCGTCGCCCG GGGCCAGGCG CTGTACCGGC TGACCGGGGA GGTCGTGTCC GGACTCGCGC TGGGGGCCGT GTACGTGACG CTGGTCCTCC TGCTCAACGC CGAGATCATG CCGCTCGCCG CCGCGGGCAC GGCGGTCCTG GCCATCCGGA ACGGGCGAGG CGCGCTGTCC TCGGCGCTCG ACAGCCTGAA CAGCGCCTTC GAGAACTTCC TGTACTTCGG GGAGTACCGG TCGTGGATCG CGGAGGCGGC CCGCCGGGTA CCGGCGCCAC GCGGCGACAT GGCGCCGGCC GAACCGGCAG TCGTCCGGGT CGACGCCGCC ACCTACACCT ACCCGCACAC CGACACCCCG GCGCTGCGCG GGGTCACCGT CGAGCTGCGG CGCGGCCAGG TCGTCGCGTT CGTCGGCGCC AACGGCAGCG GCAAGTCCAC CCTCGCGAAG ATCCTCGCGG GCCTGTACGA ACCGGACGAG GGGACGGTCA GCTGGGACGG GGTCGACCTG GGCCAGGTCG ACCCGGACAG CGTCCGGGCA CGGGTCGGTC TGATCCCGCA GCAGTACACA CAGTGGCCGA TGTCGGCCCG GCTCAACATC GCCGTCGGGA ACATCGACCG GCTCGCCGCG GACGGCCCGG ACAGCGTGAT CCCGGCCGCG ACGGCCACCG GCGCGGCCGA GGTGATCGAG AAGCTGCCGT ACGGCTACGA CACCTCGCTG GCCCGGCAGT ACAACTCGGG GCACGACCTC TCCGGCGGGC AGTGGCAGCG GATCGCCTGT GCGCGGGCGG TCTACCGGGA CGCCCCGTTC CTCATCGCGG ACGAGCCGTC CGCGGCCCTC GACGCCCGCG CCGAGCAGGC GCTCTTCGAC CTGATCCGCG AGCAGGGGCG GGACAGGGTG GTCCTGCTGA TCACCCACCG GCTGGCCAGC GTGCGCACCG CCGACCGCAT CTACGTCCTC GACGAGGGCC TGGTCGTCGA CAACGGCACG CACGCCGAGC TGATGACGCG GCCCGGCATC TACCAGGAGC TGTTCAACCT GCAGGCACGA CAGTTCGTCG ACCTGCCGGA TCCGGCGGCG CCAATGCCCT GA
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Protein sequence | MPVDRDPDAI SLVPAQREAQ SRPPEGPDPG TGAPEQARDP VLTYGREDDD TPRPWSRHDR TMERTGVLAM TRRLPGLLRL AWSLAWEADR IGLVTMVGLR VLSGLVEAAG LLAVAGALTA VLSEGPTPQR LHDAIPALVL VVGAGVVRTA ISLVTSLLQS RFGPRVDRVS IVRLLDLATR TSVMSFDDPR FVDDLDAAER GAASGRQLVD NAVNVFTSGV QMVAAGSVLG VLHPLLLPLL VLSILPDGWA TARSARLAHA SWLGRIRKIR RQFMLRNHMT DRDCSAEIRS FGLNRFLLDE YIALARENEA EQVRVARGQA LYRLTGEVVS GLALGAVYVT LVLLLNAEIM PLAAAGTAVL AIRNGRGALS SALDSLNSAF ENFLYFGEYR SWIAEAARRV PAPRGDMAPA EPAVVRVDAA TYTYPHTDTP ALRGVTVELR RGQVVAFVGA NGSGKSTLAK ILAGLYEPDE GTVSWDGVDL GQVDPDSVRA RVGLIPQQYT QWPMSARLNI AVGNIDRLAA DGPDSVIPAA TATGAAEVIE KLPYGYDTSL ARQYNSGHDL SGGQWQRIAC ARAVYRDAPF LIADEPSAAL DARAEQALFD LIREQGRDRV VLLITHRLAS VRTADRIYVL DEGLVVDNGT HAELMTRPGI YQELFNLQAR QFVDLPDPAA PMP
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