Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_3821 |
Symbol | |
ID | 5672185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 4539371 |
End bp | 4540060 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641242700 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001508120 |
Protein GI | 158315612 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.018492 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0696013 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCCCG GGAACGAGAG CTTCACCAAG GCACGGCTGT GCGAGCAGCA GCACCCCAGC AAGGCCGTGG TCTTCCACTT CAACCCGTCG ACCATCAAGA TCGGCAAGAA GGCGGAGTAC AAGGAGCACC CCACTCAGGC GGCCAAGGAC GCGTCCCGCC CGGCCTTCCT CGGCGCCCGC GCCGTGGACC TGCAGTTCAG CCTGCTGCTC GACTCGGGGG GCCAGGGCGG AAGGACCGTG ATGACCGAGA TCCAGCAGCT GCTCAACTGG ACGAACCCCA CCGAGCGCTC CCGGCGCGGG ACGTCGCCCA GCCCGCCGGT GCTGATGTTC AACTGGGGTG ACTTCAAGGT CGGCCAGACC GGGCAGTTCG TCGGCCTTCT CACCAGCGTC GACGCCACCT GCACGCTGTT CACGCCCACC GGTGCGCCCA CCCGCGCCGA GGTCTCGCTG GCGATGAAGG CGGCTCCCGA GCCGGCCAAG GGGACGAACC CGACCTCCGG TGGGATCAGC GCCCGGCAGG CCCACCAGGT CATCGCCGGC GACACGCTGG CCGCCATTGC GCACAACACA TACGGCGACC CCGGCTGCTG GCGGGCGCTC GCCGAGCTCA ACGGCATCGA CGACCCGATG CGGCTGCCGG TCGGCACCCG GCTGCTGCTG CCGGACCGGG CCGACCTCGG GCGCGGCTGA
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Protein sequence | MSPGNESFTK ARLCEQQHPS KAVVFHFNPS TIKIGKKAEY KEHPTQAAKD ASRPAFLGAR AVDLQFSLLL DSGGQGGRTV MTEIQQLLNW TNPTERSRRG TSPSPPVLMF NWGDFKVGQT GQFVGLLTSV DATCTLFTPT GAPTRAEVSL AMKAAPEPAK GTNPTSGGIS ARQAHQVIAG DTLAAIAHNT YGDPGCWRAL AELNGIDDPM RLPVGTRLLL PDRADLGRG
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