| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2481 |
|---|
| Symbol | |
|---|
| ID | 5670877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 2959567 |
|---|
| End bp | 2961774 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641241398 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_001506819 |
|---|
| Protein GI | 158314311 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGTCT CCGGCGGTCC CGCGCCGCCC GGAGCCGGGC CGGCGGCGCC GGGGTTCCGG
ATCGCCCCCA GCGACCCGGC CCGCGGCGGG GCCGGGCCGC GGACGCGGGT CTGCGCGGAC
AGTGCCACCT GTGCGGACTG CCTGGCCGAG CTCGCCGACC CGGCCGACCG GCGCTACCGC
TACCCGTTCA TCAACTGCAC CAACTGCGGC CCCCGCTTCA CGATCATCCG GGACGTCCCC
TACGACCGGC CGGCCACGAC GATGGCCGGA TTCCGGATGT GCGCGCGGTG CCGGGCGGAG
TACGACGACC CGGCCGACCG CCGCTTCCAC GCCCAGCCGG TGTGCTGTCC GGACTGCGGC
CCCACCCTCA GCTTCCGGCC CACCGCCGCC GCGTCGCCGA CGTCCGACGA GCCGCTGGAG
CGAGCAGCGG GGCTGCTGCG GGGCGGCGGG ATTCTCGCGG TGAAGGGGCT GGGCGGGTAC
CACCTGGCCG TGCTCGCCGC GGACGGGTCC GCGGTGGCGA CCCTGCGCCG GCGCAAGCAC
CGGGACGCCA AGCCGTTCGC CGTCATGGTG CGCGACCTGG CGACCGTCGA GGAGATGTGC
TGCCTCGACC CCACCGCGCG CCTCCTGCTC ACCGGGCGGC GCCGGCCGAT CGTCCTGGTC
GAGCGCTGCC GGCCCGCTAG GCGGGTCGCC GAGGCGGTGG CGCCGGGCAC CGGGACGCTC
GGCGTGATGC TGCCGTACAC GCCGCTGCAC CACCTTCTGC TCGGCCTGCT GCCCGGCCCG
ATCGTGCTGA CCAGCGGCAA CATCTCCAAC GAGCCGATCG TGTACCACGA CGAGGAGGCC
CTCGCCGCGC TCAGCCCGGT CGCGGACGGT TTCCTCGCCC ACGACCGGGC CATCCACACC
AGGCTCGACG ACTCGGTCGC CCGGTCGGTG CGCGGCCGGG AGACGCTCGT GCGCCGCTCC
CGCGGCTACG CCCCGGAGCC GCTGCCGCTG CCCTGGGACG TCCAGCGGCC GGTGCTGGCC
TGCGGGGCCG AGCTGAAGAA CACCGTGTGC CTGGCGGCGG GGCGGCGGGC GTACCTCTCC
GGCCACATCG GGGACCTGGA GAACCACGAG ACGCTGCGGT CGTTCGTCAG CGGGATCGAC
CACCTGCGCC GGCTGTTCGA CATCTCGCCC GAGCTGGTAG CGCACGACCT GCACCCGGAG
TATCTGTCCA CGAAGTGGGC GCTGGAGCAG GACCTGCCGG TCGTCGGCGT GCAGCATCAC
CACGCGCACA TTGCCTCCTG CCTGGCGGAC AACGGCCATC CCGGGCCGGT GCTCGGTGTG
GCCTTCGACG GCCTCGGCTT CGGTCCGGAC GGCACCCTGT GGGGCGGGGA GTTCCTGTGG
GCCGACCTGG CCGGCTTCAC CCGGCTCGCA CATCTCACGC CCGTCCCGAT GCCCGGGGGC
GTCGCCGCGA TCCGGGCACC ATGGCGGATG GCCGCCGCCC ACCTGCTCGC CGCCGGCGTC
GCCGACCCGG ACCGCCTCGC GGTCGCCCGC CGCAACGCCG ACCGCTGGGA CGCGGTCGCC
GCCCTGGCCA GGTCCGGTGC CGCCCCGTCC CCGGTGGGTG CCCCGCTGAC CAGCAGCGTC
GGACGGCTGT TCGACGCCGT CGCGGCTCTC GTCGGCGTCC GGGACACGAT CACCTACGAA
GGGCAGGCCG CGATCGAGCT GGAGCGGATC GCCGCCCCCG GCGACTACGG CCGCTACCCG
GCGAGCCCCC CGCCGTCGGG TGCCGGGCTG CTGCTGCCGG GCGCCGACCT GATCCGCGGC
GTCGTGGACG ACCTGCGCGA ACGCGTCGAC CCCACGGTGA TCGCCGCCCG GTTCCACAGC
ACGCTGGCCG GGCTCACCGT CGACATCTGT GCCGCCCTGC GTGCGGGGCT CCCGGGGCGC
CAGGCGGGAG CGGTGGCGCT CTCCGGCGGC GTCTTCGGCA ACCTGCGGCT GCTCGGCGAG
ATCATGGACG GGCTGGTAGA CCGGGGCTTC ACCGTCCTGA CCCACTCCCG GGTGCCCTGC
AACGACGGCG GGATCAGCCT CGGTCAGGCG GTGGTCGCGA ACGCCCGCAG CCAGCCGTAC
CAGTCGTCGA GCCCGGTGCC GGCGATCGCC GACACCGGCA GCACCGGGGC GGACGGGTTG
ACCAGCCGCA CGGACTCGGC GAACAGGTCA CCGTCGAAGG CGAGGTAG
|
|---|
| Protein sequence | MDVSGGPAPP GAGPAAPGFR IAPSDPARGG AGPRTRVCAD SATCADCLAE LADPADRRYR
YPFINCTNCG PRFTIIRDVP YDRPATTMAG FRMCARCRAE YDDPADRRFH AQPVCCPDCG
PTLSFRPTAA ASPTSDEPLE RAAGLLRGGG ILAVKGLGGY HLAVLAADGS AVATLRRRKH
RDAKPFAVMV RDLATVEEMC CLDPTARLLL TGRRRPIVLV ERCRPARRVA EAVAPGTGTL
GVMLPYTPLH HLLLGLLPGP IVLTSGNISN EPIVYHDEEA LAALSPVADG FLAHDRAIHT
RLDDSVARSV RGRETLVRRS RGYAPEPLPL PWDVQRPVLA CGAELKNTVC LAAGRRAYLS
GHIGDLENHE TLRSFVSGID HLRRLFDISP ELVAHDLHPE YLSTKWALEQ DLPVVGVQHH
HAHIASCLAD NGHPGPVLGV AFDGLGFGPD GTLWGGEFLW ADLAGFTRLA HLTPVPMPGG
VAAIRAPWRM AAAHLLAAGV ADPDRLAVAR RNADRWDAVA ALARSGAAPS PVGAPLTSSV
GRLFDAVAAL VGVRDTITYE GQAAIELERI AAPGDYGRYP ASPPPSGAGL LLPGADLIRG
VVDDLRERVD PTVIAARFHS TLAGLTVDIC AALRAGLPGR QAGAVALSGG VFGNLRLLGE
IMDGLVDRGF TVLTHSRVPC NDGGISLGQA VVANARSQPY QSSSPVPAIA DTGSTGADGL
TSRTDSANRS PSKAR
|
|---|
| |