| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_1477 |
|---|
| Symbol | |
|---|
| ID | 5669881 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 1768605 |
|---|
| End bp | 1769249 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641240397 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001505823 |
|---|
| Protein GI | 158313315 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.698473 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC CCGGCGCGGG CGCCACCACG GAGCTGCTCT GCGCCTCCTA CAGCTTCGAC
CAGACCCGCC CGCACCCGCT GCTCCACGGC CTGCCCCAGG TCGTTCACCT ACCCGCCCGC
GTCGGGCACC ATCCCGATCT TCGTGCCGCC GTCGATCTCC TGGGCAACGA ACTGCGACGG
CCCCGCGCCG GTACGGAGGC CATCGTGCCC GCGCTCATCG ACATGCTGCT GCTCTACGTC
CTGCGCGCCT GGCTCGATGA GCAGTCCGGA CATGCCCTGA CCGGCTGGGT CATGGCGCTG
AACGACCCGG CCATCTCGAC GGCGCTGCAC CACGTCCATC GCCACCCCGG GCGCCCGTGG
AGCGTCGAGG ATCTGGCCAG GGAGGCCGGA CTGTCGCGCG CGGCCTTCGC CAAGCGGTTC
GCCACCATCG TCGGTCAGCC CCCACTGGCG TACCTGACGT GGTGGCGGAT GACGACTGCC
GCGCGACTGC TGCGCGAGTC CAAGGCCCCA CTGAGCGCGG TCGCCGAACG TTGTGGCTAC
CGCTCGGAAT TCGCGTTCGC CAAGGCGTTC AAACGTGAAT TCGGCGCCGC ACCCGGCAGG
TACCGGCGCC AAGGACAGCC TGGTCAAGAT CCATTTGGGA AGTGA
|
|---|
| Protein sequence | MTIPGAGATT ELLCASYSFD QTRPHPLLHG LPQVVHLPAR VGHHPDLRAA VDLLGNELRR
PRAGTEAIVP ALIDMLLLYV LRAWLDEQSG HALTGWVMAL NDPAISTALH HVHRHPGRPW
SVEDLAREAG LSRAAFAKRF ATIVGQPPLA YLTWWRMTTA ARLLRESKAP LSAVAERCGY
RSEFAFAKAF KREFGAAPGR YRRQGQPGQD PFGK
|
|---|
| |