Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_1355 |
Symbol | |
ID | 5669764 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 1633885 |
End bp | 1638534 |
Gene Length | 4650 bp |
Protein Length | 1549 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641240282 |
Product | TrwC relaxase |
Protein accession | YP_001505709 |
Protein GI | 158313201 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTGCCGTG ACGGAGCCTG CGGGGAAAGG AACGGGGAAC CATCGGCCTC CGAGGGTAAC GTCGCTGCGC TCGAACATTC CCGAGCTGCC CAGGACCGCA CCGCCTACCA CCAAGACGCC ACCGTTTCCG AGGATCTCGG GCTCAACGCT CCATTGGAAG AACCCGCAGC CCGTTGCGCG GGTCAAGCCC GACTGCGGGG GAGCCGGCAG GTGGAGGAGC CACGTGCAGT GATCGTCACG GTGAAGCTGC TGGGATTGCG AGCCCGCGAC GCCGGAACGG TGGTGAAGGC CGCCCGCCGG ATCGTCGCCT ATGTCGAAGG TGCCCCCGCC GCCGAGCCGA CGAAAATGCG GGCGGCGTAC TACGGAGAGA ACGGACAATC GCGGGGGCGC GCTCGTGGTT CTGGCGGGAG CCTGGTCGGC CTACGCGGTC CGGTGAGTTC CGAGCAGCTG CAGCAGCTGC TGACCGGCCG GCACGCAGCG ACGGGTAGCC CGTTGCTAAC CGGAACGGGC TCGGCGGGGC GCGTTGACCG AGGAACCGTC AACCTGCCGG CCGGTCAACG GTGGTTCACC CTGACCGAGG CGGCCCGGAT TGTCGGTGTG GATGCGTCCT ATCTTCGCCG ACTGGCGCGC CAAAGCTCCG GCGCGGAGAC AGGCGGCCCG CAACGGCAAC GTGATGCCGA GCCGTCGGAA GATGCGGCAC CGAGCACATC CAGAGAGGAG CAGCATGATG ACTCCCCAGG AGAGAAAACT GCTGCGCGGT TAGCCGCGGA GCGAGACCCT GATTCCGGTC GGTGGCGGGT CGCGCGCGAT GAACTGATCC GTTTTGTCGA GCAGCGGGAG CCGCCCACGG TCGTGATCGG ATTCGATGTT GTCTGTGCCG TACCGAAGAG CCTGAGCCTG CTGTGGGTCT TCGGGGATGA CGAGCTTCGA CGAGACATCG AAAATTCGAT GAACGCTGCT GTCGACGCGG TGTTCACCTA CCTGGAGAGG CACGCGGCAC AGGGCATGGT GGGCAGCCGT AATCATCCGG GTCTCGGCCT GGCCGCGGCT TCCTATCTGC ACGACGTGTC GCGGGCGGAC GAGGCGCATC TGCACATCCA CAACATCGTC GCGAACGCGG TCGCGATACC AGTCCTCGAT GAAACCGGTC GGCCGGAGCG GGACCCGGTG GGCGGAGCAC GGGTGGAGTG GCGGGCGCTG GACAGCGAGC TGTTCCTGGC GCATGCGCGC ACAGCCGGGT TCGTCGGCGC GGCCGTGCTT CGCCACGAGC TGGCCCGCCG TCGGGGTGTC ACGTGGGCGC CGGTCCGCAA CGGGGTGGCC GAGCTGGAGG ATTTTCCCAC CGAGCTGCTG GCGGCGTTCT CCACCCGTCA CGGGCAGGTA CAGGAGGAGC TCGGCCAGCT GGTGGCCCAG GGAATGCTCT CGGACGGGCG GACCGAGGCG GCAGCCCAGC GGCGGTCCCG GGCCGCGAAG AAGGTGCTGG CCGACGCCGA GGTGCACGCC GTGCAGGAAC GGCGCCTGAC CGAGGCCGGT TGGCACCCCT CTCAGGTGCG GGATCTCGCC CGCCGCCGCG ACCGGGTACC GGTACAGCCG ACGGCCGTGG ATCTCGCCGA GCTGGCGGAC CGGCTGATGG GACCGCAGGG CCTGACAGCG AAGGCGCCGA CGTTCGACCG GCGCGACGTC TACCGGGAGG TCGCCGCCTG GGCATGCGAC CGGCTCGACG CCCACGCGAT CTCCACCGTC GTCGACCAGC TCCTGGCCGA TCCGCGGATC GTCCGGTTCG AGCAGCATTC CGCGCGCCGG CGGCACCGCG GCGAGGAGAC GTTCAGCACT GAGGATCTCC TCGACACCGA GGACAGCCTG CTCAGCCTGT GCCGACAGGG CCGCGTCGAC CGGGGAGGAC CGCCCCGCAC ACTCATCCCT CCCGCCGCGG TGGAGGCGGC GTTGTCCGGC GACGGCGACG GCGCCCTCGG TGGAATACCG GGAGTGCGGC TGAGCGGTGA ACAGCAGGAC CTCGTCCGCA GACTTCTCAC CGACGACGAT CTGGTCCGGC TGGTGGTCGG CCCTGCCGGA TCAGGCAAGA CGGCGGCGAT GCGGACCGTC GCGCGGGTGC TGGCCGCGCG GGGCGTCACC GTCCTCGGAG CGGCCCACGG CGGCCGTCAG GCCGAACAGC TCGCGGCCAC GCTGGAGGTG GAGACCCGGG TGGTCAGCGG GTGGCTCACC CTGCTTGACC ACACCGAGGA TCCCGCCTCG TACTGGCCGG ACGACACGGT CCTGATCGTG GACGAGGCGA GTCAGGTCTC CACCCGAGAC GCCGAGCGGT TCCTGCGCTA CGCCACCCGC ACCGGCACGG TCGTGATCCT CGTGGGCGAT CCGGCGCAGT TGGGGAGCGT CGGCGCGGGC GGATGGTTCG CGCACCTCGT CACTGAAACG ACGCCCCCGC AGCTCACCGG CACCCACCGC CAACGCGGAC CCGGGATGGC CGAGGTCCGC GCGGCACTGG CCGGCCTGCG CTCCGCGCTG CCGGCCGAGG CGATGGCCGC GGTCAGTTCG CTGGCCCGCT CCGGCCACGT CCGCCTGTTC GACGACCGCG CGGCGCTGCT CAGCACGGCG GTCTCCGACT GGTACACCGA GCGCCGGCAG GCCGGCCGGG CCACGCCGAT GATGGCCGAG CACCAGCGCG ACGTCGACGC GCTCAACACC GCGGCCCGTG ACGCACTGAC CGCAGACGGC ACGCTGACCG GTCCCGTTCT CACCGCGGCC GGCCGCGAGT ACCAGACCGG CGACGAAGTG ATCACCCTCA CGCAGGCCGG CCACACCCTG ATCCCCGCAG GCCGGCCCCG CGGCGACTAC ATCCGTACCG GAACCATCGG CCGGATCGTC GCGGTGCGCA TCGACCCGTC CCGGCCGCAG CACCAGTCGG TAACCGTCCG ATTCCCCGGT AAGGGAACGG TGGACGTCGG CTGGGACTAC CTCACCCACC CGTTCCCCGA CGGCCGGGAC GGCGGTCTGG GCCACGCCTA CGCGCTCACC GCGCACAAGG CTCAAGGGTC GACGATGTCG ACGGCGCGGC CGCTCATCGT CGACGACACC TCCCGTCCTG GGCTGTACGT CATGCTGTCG CGCGCCCAGC AGCGCCTGCA GGCCTATCTG ATCCGCCGCC CCGACCTCGA AGCCGACCTG GACGACGAGG ACTGGCTCCC CGTTCTGCCG ATCGACAGCG CGGTCGATCG GCTGGCCGAG CGGCTGCGCA CCTCGCGCGC CGAGCGGCTC GCGGGCGACC TTGACCCCAT CGCTCAGACC GCCCACCGCC TCGGCAGCTC CCACAGCCTG GCAGAACTCC TCGCGCTCGA CAGCCCCACC GGCCCGCGGG GCAGCGAGAC CGAACGGCCG GGAGCCACTG TGCTGCGCAG GGCTCAGATC GCCGCACAGG CCCGGGTCAC CGCTGCGGCT GTGGCGGCTC CGGAGCCGGC TCTGCTCGCC AGGATCGGCC CGAGACCGGA AGCAGGACCG CACCGGCTGC TGTGGGACAG GGCTGTCAGC GCGCTCGCCA CCTACCGGGC CGCCCACGCG CCCGCCGCCC CCGCCGACGA CCCGGGCCCA CGGCCGGAGC CCGGCCACCA GGACACCGGC GCCCAACGCT GGAAACGACT ACGCGGCCAA GCCACCATGC TGGCCGACGC CTGGGCCACC CGGCTGTCCG CCGGCGCCGC CCGCCGCTTC GCCACTGGTG AGGAGGCCGT ACCTCGCCGA CGGTCGGTGG CGGGCATCCA CGCGTTGCTG GACGCCGGCT GGGACGCTCG CGATCTCCTG GCGAAGCTCG GCGAACAGGA GCAGACCACC GCGCGCACCG GCGCCTCGGT TCTGGACCAT CGGGTCGCCG TCCTCTGCGC GCGGGCCCGG CTGGACATCG CCGCCTTCCA GCTCCCCGCA CCGCAGACCG CGGCCGAAGC CTGGCACGCG GCGACCACGC TGCTCGGCTC CGCGGAGTCC AGGTATCTCG CGACCCGACC CACCGCCGAC CTTGCCGCCG AGGAGCGGCT ACTGGGCCGC GTTCTCCGCA TGACCAGGAA CGACGACGAG CTCCGCGCGC ATCTCCTCAC CCGCATCCGC CGGATGGAGG CGGACCACTC CGCAGCCATA CGGCGCCTTG ACCACGACAA CGGACCATCC GGAGTAGCAG CCGCCGAAGG TTCTGGCCCG TCCGCGCAGA CACCTCCTGC CGTACACCGC CTCCGGCGGG CGCAGGCAGC GCACGAACTA CGGCTCCGTC GCACCCTGCT CGCCGCCGTC GACGGCGACC CGGCCGCTCA CGAAGTGGCC GCGCGGCATC AGAACCGCGT CAACGCTGCC CTGGAGCACC AGATTGATGA GGCGCTGCTG CGCATCGACC AGGAACCGCC GCGCTATCTC ACCGACCTGA TGGGATCCCG GCCCGCCGAC GCCGCCGGTG CGGCCCGCTG GCGCGAGCGT GCCCGCGCGG TGGAGGACTT CCGGCACCGC GAGCTCGGCC TAGCCTACGG GGTGCTGGCC GCGCCGTCGG CAAGGACGCC TTCCGCGCGA GCCCTCGACG TGCCTCCCAA ACAACCTGAG CTGCGCGTCC GCTACCAGGC GCTCCTGTCG GACCCCCAGC AGCTCGATAT CGATCTCTGA
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Protein sequence | MCRDGACGER NGEPSASEGN VAALEHSRAA QDRTAYHQDA TVSEDLGLNA PLEEPAARCA GQARLRGSRQ VEEPRAVIVT VKLLGLRARD AGTVVKAARR IVAYVEGAPA AEPTKMRAAY YGENGQSRGR ARGSGGSLVG LRGPVSSEQL QQLLTGRHAA TGSPLLTGTG SAGRVDRGTV NLPAGQRWFT LTEAARIVGV DASYLRRLAR QSSGAETGGP QRQRDAEPSE DAAPSTSREE QHDDSPGEKT AARLAAERDP DSGRWRVARD ELIRFVEQRE PPTVVIGFDV VCAVPKSLSL LWVFGDDELR RDIENSMNAA VDAVFTYLER HAAQGMVGSR NHPGLGLAAA SYLHDVSRAD EAHLHIHNIV ANAVAIPVLD ETGRPERDPV GGARVEWRAL DSELFLAHAR TAGFVGAAVL RHELARRRGV TWAPVRNGVA ELEDFPTELL AAFSTRHGQV QEELGQLVAQ GMLSDGRTEA AAQRRSRAAK KVLADAEVHA VQERRLTEAG WHPSQVRDLA RRRDRVPVQP TAVDLAELAD RLMGPQGLTA KAPTFDRRDV YREVAAWACD RLDAHAISTV VDQLLADPRI VRFEQHSARR RHRGEETFST EDLLDTEDSL LSLCRQGRVD RGGPPRTLIP PAAVEAALSG DGDGALGGIP GVRLSGEQQD LVRRLLTDDD LVRLVVGPAG SGKTAAMRTV ARVLAARGVT VLGAAHGGRQ AEQLAATLEV ETRVVSGWLT LLDHTEDPAS YWPDDTVLIV DEASQVSTRD AERFLRYATR TGTVVILVGD PAQLGSVGAG GWFAHLVTET TPPQLTGTHR QRGPGMAEVR AALAGLRSAL PAEAMAAVSS LARSGHVRLF DDRAALLSTA VSDWYTERRQ AGRATPMMAE HQRDVDALNT AARDALTADG TLTGPVLTAA GREYQTGDEV ITLTQAGHTL IPAGRPRGDY IRTGTIGRIV AVRIDPSRPQ HQSVTVRFPG KGTVDVGWDY LTHPFPDGRD GGLGHAYALT AHKAQGSTMS TARPLIVDDT SRPGLYVMLS RAQQRLQAYL IRRPDLEADL DDEDWLPVLP IDSAVDRLAE RLRTSRAERL AGDLDPIAQT AHRLGSSHSL AELLALDSPT GPRGSETERP GATVLRRAQI AAQARVTAAA VAAPEPALLA RIGPRPEAGP HRLLWDRAVS ALATYRAAHA PAAPADDPGP RPEPGHQDTG AQRWKRLRGQ ATMLADAWAT RLSAGAARRF ATGEEAVPRR RSVAGIHALL DAGWDARDLL AKLGEQEQTT ARTGASVLDH RVAVLCARAR LDIAAFQLPA PQTAAEAWHA ATTLLGSAES RYLATRPTAD LAAEERLLGR VLRMTRNDDE LRAHLLTRIR RMEADHSAAI RRLDHDNGPS GVAAAEGSGP SAQTPPAVHR LRRAQAAHEL RLRRTLLAAV DGDPAAHEVA ARHQNRVNAA LEHQIDEALL RIDQEPPRYL TDLMGSRPAD AAGAARWRER ARAVEDFRHR ELGLAYGVLA APSARTPSAR ALDVPPKQPE LRVRYQALLS DPQQLDIDL
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