| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0907 |
|---|
| Symbol | |
|---|
| ID | 5669321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 1057991 |
|---|
| End bp | 1058866 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641239834 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001505269 |
|---|
| Protein GI | 158312761 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.960814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.106337 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGC ACACCAGCGG GGGAAGCCCC ACAGTGCGCC GTCGGCGGCT CGGCGCCGAG
CTCCGCCGAC TTCGGGAACA GACCGGCCTG TCGGCGGACG ACGCCGCGCG CCATCTCGAA
TGCTCGCCCT CGAAGATCAG CCGGGTCGAG ACCGGGCGGA CACCCGCTCG CCTTCGCGAT
GTGCGCGACC TGCTTGACCT GTACAAGCTG CAGGACACGC CCCGGCGGCA GGCGCTGCTC
GACCTGGTGC GCCAGTCGAA GGAACAGGGG TGGTGGCAGT CCTTCGGCGA CGCGGTGCCG
GAGTGGCTGG AGACCCTGAT CGGCCTCGAG GGGGACGCGC AGGCCATCCT CACCTACGAG
TCGGCACTCG TCCCCGGCCT GCTGCAGACC GAGGAGTACA CCCGGGCACT GGCCATGGAC
TTCGACCGTG ACGGCTCGCC GTCCGAGGCC GAGCGGACGG TCGCATTCAA GCGGGAGCGC
CAGAAGCGGC TGAGCCAGAG CGGCTGGCCG CAGGTCCGGG TGATCCTCGA CGAGGCGGTG
CTGCGCCGGC CGGTCGGCGG GCCGGACGTG CTGCGCGGCC AGTTGGAGCA CCTGCTGGCC
GAGGCGGACC GCGGCCGGGT CACCATCCAG GTGATCCCCT TCGAAGCCGG CGGCTACCAG
GCCCAGGGCT TTCCGTTCAC CCTCTTCGAG TTCCCGGACG CCCGAGACCA ACCCGTGGTC
TATCTCGAAG AACTTGCCGG CGCGATGTAC TTGGAAAAGG CGCACGAGGT TCAGCGCTAT
AAGGTCGCCT TCGAGAAACT GCGGGCCTGC GCTCTCGGTC CTGACGAGGC AGGCGCCATG
ATCACGCGCA TAGTCGAGAA GGTGAAACAG GAGTGA
|
|---|
| Protein sequence | MSEHTSGGSP TVRRRRLGAE LRRLREQTGL SADDAARHLE CSPSKISRVE TGRTPARLRD
VRDLLDLYKL QDTPRRQALL DLVRQSKEQG WWQSFGDAVP EWLETLIGLE GDAQAILTYE
SALVPGLLQT EEYTRALAMD FDRDGSPSEA ERTVAFKRER QKRLSQSGWP QVRVILDEAV
LRRPVGGPDV LRGQLEHLLA EADRGRVTIQ VIPFEAGGYQ AQGFPFTLFE FPDARDQPVV
YLEELAGAMY LEKAHEVQRY KVAFEKLRAC ALGPDEAGAM ITRIVEKVKQ E
|
|---|
| |