Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_4082 |
Symbol | dnaE |
ID | 3907046 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 4888403 |
End bp | 4891954 |
Gene Length | 3552 bp |
Protein Length | 1183 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637881410 |
Product | DNA polymerase III subunit alpha |
Protein accession | YP_483159 |
Protein GI | 86742759 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGACGG ATTCTTTTGT TCACCTCCAT GTGCACACTG AGTATTCGAT GCTGGACGGT GCGGCGAAAA CGGGCCTGCT TTTCAAGGAA GCGGCGAAGT TGGGGATGCC GGCTGTCGGG ATGACCGACC ACGGTAACAT GTTCGGTGCC TACGAATTTT ATCAGGGTGC GAAGTCCGCG GGTGTCAAGC CGATCATCGG GATCGAGGCG TACCTGGCGC CCGAGTCGCG CCACCACAAG CGGCCTGTCC TGTGGGGGGA ACGCTCGCAG CGCGACGTCG ACCCTGCGGG TGAGGGCGGT GACGTGTCCG GTGGCGGCGC CTACACCCAC ATGACGATGC TCGCAGCCAA CGCCGCCGGG CTGCGCAACC TGTTCCGGCT GTCGTCGATC GCGTCGATCG AGGGCTACTA CCGCAAGCCG CGGATGGACC ACGAGCTGGT CTCCCAGTAC TCCGAAGGGA TCATCGCGAC CACGGGCTGT CCGTCAGGTG AGGTGCAGAC CCGGCTTCGT CTGGGCCAGT TCGACAAGGC GCTCGCGGCA GCGGCCACCT ACCAGGAGGT CTTCGGCGCG GACAACTTCT TCCTGGAGTT GATGGATCAC GGTTTGCCGA TCGAGCGCAG CGTCCGCCAG GGGCTGCTCG ACATCGGCGA CAAGCTGGGG CTTCGCCCGC TGGCCACGAA CGATTCGCAC TATGTGACCC AGGATCAGGC GGGAAGCCAC GAGGTGCTGC TGTGCGTCGG CACCGGTAAA AAACTCGACG ATCCGACCCG TTTCAAATTC GACGGATCGG GATATTATCT CAAGTCTTCG GAGGAAATGC GCAACTTGTG GGACAGTGAG GTCCCCGGGG CCTGCGACAG CTCTCTGCTT ATCGCCGAGC GCGTCGAGTC CTACGACGAT GTTTTCAAGT TTGTGGACCG GATGCCGCGG TACCCTGTCC CCGCGGGTGA GACGCAGCTG TCCTGGCTGC GCAAGGAAAT CGACCGCGGA CTGACGTGGC GCTTCCCTGC GGGCGTGCCC GCCGATGTGG TCGAGCGCGT CGACTACGAG GTCGGCGTGA TCGACAAGAT GGGTTTCCCG GCTTACTTCC TGGTCGTCGC CGACATCTGC AAGTTCGCGA GAGATCGGGG CATCGGGCTG GGTCCGGGGC GTGGATCGGC GACCGGGTCG ATGATCGCCT ACATCCTGGG TATAACCGAG CTGAACCCGA TCGAGCACGC GCTGATCTTC GAGCGGTTCC TCAACCCGGA GCGGATCAGC CCGCCGGATA TCGACCTGGA CTTCGACGAA CGTCGACGCG GTGAGGTGAT CCGCTACATC ACCGAGCAGT ACGGCGAGGA CCGCGTCGCG CAGATCAACA CCTTCGGCAC GATCAAGGCC AAGGCCGCGA TCAAGGACTC GTGCCGGGTG CTGGGTTACG ACTACGCCCT CGGCGACAAG ATCTCGAAGG CGATGCCGCC GGATGTGATG GGCCAGGGCA TCCCGCTGGC CGGGATCTTC GACCCGAACC ATGAGCGGTA CGGTGAGGCC GCCGAGGTCC GGGCCCAGTA CGAGACCGAC ACCAAGGTTC GGAAGGTCAT CGACACCGCG CGGGGGCTGG AGGGGCTCAC CCGCGGCACT GGTGTCCACG CCGCCGGGGT CATCCTGTGC TCGGAGCCGC TGCTGGATGT CCTGCCGATC CATCGCCGCG ACAATGACGG CGCGATCATC ACCGGGTTCC CGTTTCCTCA GTGCGAGGAG ATGGGCCTGC TCAAGATGGA CTGCCTCGGG CTGCGGAACC TCACCGTCAT CGGTGACGCG ATCGAGGCCG TCAAGCGTAA CCGCAACGTC GACATCGACC TGTCCACCCT CCCCTTGGAG GACGCCAAGG CCTTCGAGTT GCTCGCCCGC GGCGACACGC TCGGGGTGTT CCAGCTCGAC GGCGGACCGA TGCGTAACCT GCTGCGCCTG ATGGCACCGA CGAAGTTCGG CGACATCGCC GCCGTGCTCG CGCTCTACCG GCCCGGCCCG ATGGCGGCCA ACAGCCACAT CGAGTACGCA GACCGCAAGA ACGGCCGCAA GGAGATCCTC CCGATCCATC CCGAGCTCGC CGAGGCGCTG GAGCCCATCC TCGGCGAGAC CTACCACCTG GTGGTCTACC AGGAGCAGGT CATGGCCATC GCCCGGGAGC TGGCCGGCTA CAGCCTCGGC GGCGCCGACC TGCTGCGCCG CGCGATGGGT AAGAAGAAGA AGGAGATCCT GGACAAGGAG TTCGCTCGGT TCTCCGCCGG GATGAAGGAG AGGGGCTACA CCGACGCGGC GGTCCAGGCG CTGTGGGACG TGCTTGTCCC GTTCTCCGGC TACGGGTTCA ACAAGTCCCA CACCGCTGGG TACGGTGTCG TGTCGTTCTG GACGGCCTAC CTCAAGGCCA ACTACCCGGC CGAGTTCATG GCGGCGCTGC TGACGTCCGT CGGTGACGAC AAGGACAAGA TGGCGGTGTA CCTGGCGGAG ACCCGCCGGA TGGGTATCCA GGTCCTGCCC CCCGACGTCA ACGAGTCGGA CCTGCGGTTC GGTGCGGTCG GGGACTCGAT CCGCTTCGGC CTGGGGGCCG TCCGTAATGT GGGGGAGAAC GTCGTCGCCT CGATAGCCGC CGCCCGGCGG AGGAAGGGCG CGTATGAGTC GTTCGCCGAC TTCCTGCAGA AGGTCGACAT CGGGGTGTGC AACAAGCGCA CCATCGACTC GCTGATCAAG GCCGGGGCGT TCGACTCGCT GGGCCATCAC CGCCGGGTGC TGGTCAACGT ACACGAGAAC GCGATCGACG CGGTGATCAT CACGAAGCGG GCCGAGGCCA TCGGCCAGTT CGACCTGTTC GGCGACGGGG GCGCCGGCGA GGAGGAGGAG AGCCCGGGGC TAGGACTCGA CCTGGACCTG TCCGGCCCCG AATGGCCGAA GAAGGAGCTG CTGGCTCAGG AACGCGACAT GCTCGGCCTG TACGTGTCCT CGCATCCGCT CGAAGGCGCC GAGCGGGCGC TGGATCGCCA CCGCGACACC CGGATCGTCG ACCTCGCCGA GGCCAACGAC GGGACGACCG TACAGATCGC CGGTATCATC AGCAAGATCG ACCGGCGGAT CAACAAGAAC ACCGCCAAGG CGTGGGCGAT CGTGACCGTC GAGGATCTCG ATGCCTCCGT CGAGGTGCTG TTCTTCCCCC AGTCCTACGA GGTCCATTCG TACGCGCTCG CGACCGACGC GGTCATCTCG GTGCGGGGCA GGATCAACGA GCGGGAGGGG TCGGTCTCGC TGTTCGCCCA GGACCTGACG GTGGTCGATG TCGCGACGCA CGTGAACGGG CCGCCGGTCG TCATCACTCT GCCGTCACAC AAGATCACAC CACCGCTGGT CGATGACCTC AAACTCGTCC TGACGACCCA TCCCGGGACA ACTCCGGTGC ACCTGCGTCT CGAAGGCCCG CAGAACACGC ATCTGCTCCT GCTCGAACTC CAGGTGCAGG CGAGTAGTTC GCTGCTCGGG GACCTCAAGG CCCTGCTGGG TGCCCGAGCG GTCACCGTAT GA
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Protein sequence | MPTDSFVHLH VHTEYSMLDG AAKTGLLFKE AAKLGMPAVG MTDHGNMFGA YEFYQGAKSA GVKPIIGIEA YLAPESRHHK RPVLWGERSQ RDVDPAGEGG DVSGGGAYTH MTMLAANAAG LRNLFRLSSI ASIEGYYRKP RMDHELVSQY SEGIIATTGC PSGEVQTRLR LGQFDKALAA AATYQEVFGA DNFFLELMDH GLPIERSVRQ GLLDIGDKLG LRPLATNDSH YVTQDQAGSH EVLLCVGTGK KLDDPTRFKF DGSGYYLKSS EEMRNLWDSE VPGACDSSLL IAERVESYDD VFKFVDRMPR YPVPAGETQL SWLRKEIDRG LTWRFPAGVP ADVVERVDYE VGVIDKMGFP AYFLVVADIC KFARDRGIGL GPGRGSATGS MIAYILGITE LNPIEHALIF ERFLNPERIS PPDIDLDFDE RRRGEVIRYI TEQYGEDRVA QINTFGTIKA KAAIKDSCRV LGYDYALGDK ISKAMPPDVM GQGIPLAGIF DPNHERYGEA AEVRAQYETD TKVRKVIDTA RGLEGLTRGT GVHAAGVILC SEPLLDVLPI HRRDNDGAII TGFPFPQCEE MGLLKMDCLG LRNLTVIGDA IEAVKRNRNV DIDLSTLPLE DAKAFELLAR GDTLGVFQLD GGPMRNLLRL MAPTKFGDIA AVLALYRPGP MAANSHIEYA DRKNGRKEIL PIHPELAEAL EPILGETYHL VVYQEQVMAI ARELAGYSLG GADLLRRAMG KKKKEILDKE FARFSAGMKE RGYTDAAVQA LWDVLVPFSG YGFNKSHTAG YGVVSFWTAY LKANYPAEFM AALLTSVGDD KDKMAVYLAE TRRMGIQVLP PDVNESDLRF GAVGDSIRFG LGAVRNVGEN VVASIAAARR RKGAYESFAD FLQKVDIGVC NKRTIDSLIK AGAFDSLGHH RRVLVNVHEN AIDAVIITKR AEAIGQFDLF GDGGAGEEEE SPGLGLDLDL SGPEWPKKEL LAQERDMLGL YVSSHPLEGA ERALDRHRDT RIVDLAEAND GTTVQIAGII SKIDRRINKN TAKAWAIVTV EDLDASVEVL FFPQSYEVHS YALATDAVIS VRGRINEREG SVSLFAQDLT VVDVATHVNG PPVVITLPSH KITPPLVDDL KLVLTTHPGT TPVHLRLEGP QNTHLLLLEL QVQASSSLLG DLKALLGARA VTV
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