| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3926 |
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| Symbol | |
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| ID | 3906885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 4695686 |
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| End bp | 4699312 |
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| Gene Length | 3627 bp |
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| Protein Length | 1208 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637881253 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_483005 |
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| Protein GI | 86742605 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.892466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTCG CGCCGTTGCT CGACGCGCTG ATCGCCCGTC CCGGCGGGGA CCCTGCCCTG
GGCCGGGCGA TCGGCGCGGT CGGTGAACCG GTCCTCGACC TCGCTGGTCC CGCGGCGTTG
CGGCCCTTCG CCGCCGCGGC CCTGGCGGTC GGGGCCGACC GGCCGGTCCT CGCTGTCGTG
GCTACCGGCC GGGAGGCCGA GGATCTGGCG TCGGCGCTCG GCAGCCTGCT CGGTCCCGAT
GTGGTCACGG TCTTCCCGAG CTGGGAGACC CTGCCCCACG AGCGGCTGTC CCCCCGGGCT
GACACGGTCG GGCAGCGCCT CGCCGTGCTG CGCCGGCTCG CGCATCCGGC GAGCACCGGT
CGGCCGCCAC TGCGGATCGT GGTCGCGTCG ATCCGTGCGG TGTTGCAACC CCAGGTGGCC
GGGCTCGGCG AGCTCGCACC GGTCACCCTC GCCGAGGGCG ATACGGCCGA CCTCGACGGC
GTGGTGACGC GGCTGGTGGA CATCGCTTAT CACCGGGTGG ACCTGGTCGA GCGGCGCGGC
GAGATCGCCG TGCGCGGCGG CATCCTCGAC GTCTTCCCGC CCACCGAGGA ACATCCGCTG
CGGGTCGAGT TCTTCGGCGA TGAAGTCGAG GACATCCGCC GGTTCTCCGT GGCGGACCAG
CGGGCGCTAC CGGAGGATGA TGGCGCGACC GGTGGTGGCC GTGTCCTGTT CGCGCCGCCG
TGCAGCGAAC TGCTACTGAC CGCGCAGGTG CGGGCGCGGG CCGCGGACCT CGCGACGCGC
CACCCGGAGC TGCTGGACCT GCTCGACAAG ATCGCCGACG GCATCCCCGT GGAGGGGATG
GAGGCGCTCG CCCCGGTACT CGTCGACGCC ATGTCACTAC TCCTGGACGA TCTGCCGGCC
GGCACCCACG TGCTGGTCTG CGATCCCGAA CGGGTCCGTT CGCGGGCGAG CGAACTGGTG
CGCACGAGCC AGGAGTTCCT CGACGCGTCG TGGAGCGTCG CGGCGCTGGG TGGCGGCGCG
CCGATCGATC TCGGCGCGGC CGCCTACCGA TCGATCATCG AGGTCCGCGA GCGTGCGGAG
GATCTCGGCC TGCCGTGGTG GTCGGTCACT CCCTTCATGT CGACCCCGGC AGGCAGCGAC
CGGGAACCGG CGGGCACCGG GCTGACGGGC GCCGCCTACG ACGGGACCGA GTACGGCGAC
AACTACGGCG ACAACTACGG CGACAACACG GTGGTCGCCA GCCTCCGGCC CGCGCCGATC
TACCACGGGG ACACCGCGGC GGTCATCGCC GACGTCAAGG GCTGGCTCGC CGAGTCCTGG
CGAGTGCTGC TGGTCACCGA GGGGCACGGT CCGGCGCAGC GCCTGGTGGA GATGCTGCGC
GACGCCGACC TGGGCGCCGG CCTCGCCGAG GAGGCCACGC TCACTCCGGG CGTCGCCATA
GTCACCTGCG GTCGGCTCGC CACCGGCTTC ACCAGCGATA CTTTGCGCCT CGCCGTTCTT
ACTGAAAGCG ACATCGCGGG TGCCCGCGGG GTGAGCACGA AGGACATGCG GCGCATGCCG
AGCCGGCGGC GCAAGGGCAT CGATCCGCTC GCCCTGCTCC CCGGGGACAT GGTGGTCCAC
GACGCGCACG GCGTCGGCCG CTACGTCGAG ATGGTCACCA GGACCGTCGC GGGCGCCAAG
CGGGAGTATC TTCTGCTGGA GTACGCCCGG GGCGACCGAC TGTATGTGCC GACCGACCAG
CTTGAACAGA TCACCCGGTA TGTCGGGGGT GACGCGCCGA GCCTGGACCG CATCGGCGGC
GCCGACTGGG CCAAGCGCAA GAGTCGGGCC CGCAGGGCCG TCAAGGAGAT CGCCGGTGAG
CTGATCCGGC TCTACAGCGC CCGGATGGCT GCTCCCGGGC ATGCCTTCGC TCCCGACAGT
CCCTGGCAGC GTGAGCTGGA GGACGCCTTC CCGTTCCGAG AGACACCCGA TCAGCTCGCC
GCCATCGACG AGGTCAAGGC CGACATGGAG AAGCCGGTCC CGATGGACCG GGTAATCTGC
GGCGACGTCG GCTACGGCAA GACCGAGATC GCGGTGCGGG CCGCGTTCAA GGCGGTGCAG
GACGGCAAGC AGGTCGCGGT GCTGGTGCCC ACGACGCTGC TGGTCCAGCA GCACTTCCAG
ACCTTCTCCG AGCGTTACGC CGCATTCCCG GTGGTGGTGA AGGCGATGAG CCGGTTCAAC
TCGCCCGCCG AACACAAGGC GGTGCAGGAG GGGCTCGCTA CCGGCAGTGT CGACGTGGTC
ATCGGCACCC ACCGGCTGCT GTCCGGGGAG AACCGCTTCA AGGATCTCGG CCTGGTGATC
GTCGACGAGG AGCAGCGCTT CGGTGTCGAG CACAAGGAGC AGCTCAAGAA GATGCGCACG
GCGGTGGACG TGCTCACGAT GAGCGCCACA CCGATCCCCC GCACGCTGGA GATGTCGATC
ACCGGCATCC GGGAGCTGTC GACCATCGAC ACTCCGCCCG AGGAGCGGCA CCCGGTGCTG
ACCTCGGTCG CCGCCTACGA CGCCCGTCAG GTGGCCGCGG CGATCCGCCG GGAGCTGCTG
CGCGAGGGGC AGGTCTTCTT CATCCACAAC CGGGTGGAGA CGATCGACCG GGCCGCCGCC
CGGCTGCGCG ATCTGGTTCC CGAGGCGCGG ATCGCCACCG CCCACGGCCA GCTGCACGAG
GACGCGCTTG AGCAGGTCAT GGTCTCCTTC TGGGAGAAGA AGTTCGACGT GCTGGTCTGC
ACGACGATCG TGGAGTCGGG CCTGGACATC TCCAACGCCA ACACCCTCAT CGTCGAGCGG
GCCGACGTGT TCGGCCTGTC CCAGCTGCAC CAGCTGCGCG GCCGGGTCGG GCGGGGCCGG
GACCGGGCGT ACGCCTACTT CCTCTACCCG CCGGACAAGC CGCTGACCGA GACCGCCCAC
GACCGGCTCG CCACGATCGC CCAGCACAAC GACCTTGGTG CCGGAATGGC CGTGGCCATG
AAGGACCTGG AGATCCGGGG AGCGGGCAAC CTGCTCGGCG GCGAGCAGTC CGGGCACATC
GCCTCGGTCG GGTTCGACAT GTACGTGCGG ATGGTCGGCG AAGCGGTGGC CGAGTACCGC
AGGGAGGGGG TCGAGGAGCC CCCGGAGGTC AAGGTCGAGC TGCCGGTCGA CGCGAGCCTG
CCGCATGACT ACGTGCCGAG CGAGCGGCTG CGGCTGGATG CCTACCGGCG GCTGGCCGGC
GCCGCCACGG ACGCCGACAT CGACGAGGTG CGTGGCGAGC TCGTGGACCG GTTCGGTCCG
GTGCCCGAAC CGGTCGAGAA CCTGCTGGCC GTCGCGGGCC TGCGGGTGCT TGCCCGGCGC
TTCGGCGTCA CGGAGATCAT CACCGCCGGT CGCCAGATCC GGTTCGCTCC GCTGGAGCTG
CGGGAGAGTC AGACACTCCG GCTGACCCGG CTCTACCGGG GCGCCGTGGT CAAACCGGCG
GTGCGGACCG TACTCGTTCC CGCGCCGACC GAGACGGGGC GCATCGGTTC CCGGCCATTG
CGGGACCGGG CCCTGCTCGT CTGGGTCGGC CAGCTCCTGC ATGCGGTCGC GGGCGACTCG
GTCGCCGCCG CGGCGGCCTC GATCTGA
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| Protein sequence | MTLAPLLDAL IARPGGDPAL GRAIGAVGEP VLDLAGPAAL RPFAAAALAV GADRPVLAVV
ATGREAEDLA SALGSLLGPD VVTVFPSWET LPHERLSPRA DTVGQRLAVL RRLAHPASTG
RPPLRIVVAS IRAVLQPQVA GLGELAPVTL AEGDTADLDG VVTRLVDIAY HRVDLVERRG
EIAVRGGILD VFPPTEEHPL RVEFFGDEVE DIRRFSVADQ RALPEDDGAT GGGRVLFAPP
CSELLLTAQV RARAADLATR HPELLDLLDK IADGIPVEGM EALAPVLVDA MSLLLDDLPA
GTHVLVCDPE RVRSRASELV RTSQEFLDAS WSVAALGGGA PIDLGAAAYR SIIEVRERAE
DLGLPWWSVT PFMSTPAGSD REPAGTGLTG AAYDGTEYGD NYGDNYGDNT VVASLRPAPI
YHGDTAAVIA DVKGWLAESW RVLLVTEGHG PAQRLVEMLR DADLGAGLAE EATLTPGVAI
VTCGRLATGF TSDTLRLAVL TESDIAGARG VSTKDMRRMP SRRRKGIDPL ALLPGDMVVH
DAHGVGRYVE MVTRTVAGAK REYLLLEYAR GDRLYVPTDQ LEQITRYVGG DAPSLDRIGG
ADWAKRKSRA RRAVKEIAGE LIRLYSARMA APGHAFAPDS PWQRELEDAF PFRETPDQLA
AIDEVKADME KPVPMDRVIC GDVGYGKTEI AVRAAFKAVQ DGKQVAVLVP TTLLVQQHFQ
TFSERYAAFP VVVKAMSRFN SPAEHKAVQE GLATGSVDVV IGTHRLLSGE NRFKDLGLVI
VDEEQRFGVE HKEQLKKMRT AVDVLTMSAT PIPRTLEMSI TGIRELSTID TPPEERHPVL
TSVAAYDARQ VAAAIRRELL REGQVFFIHN RVETIDRAAA RLRDLVPEAR IATAHGQLHE
DALEQVMVSF WEKKFDVLVC TTIVESGLDI SNANTLIVER ADVFGLSQLH QLRGRVGRGR
DRAYAYFLYP PDKPLTETAH DRLATIAQHN DLGAGMAVAM KDLEIRGAGN LLGGEQSGHI
ASVGFDMYVR MVGEAVAEYR REGVEEPPEV KVELPVDASL PHDYVPSERL RLDAYRRLAG
AATDADIDEV RGELVDRFGP VPEPVENLLA VAGLRVLARR FGVTEIITAG RQIRFAPLEL
RESQTLRLTR LYRGAVVKPA VRTVLVPAPT ETGRIGSRPL RDRALLVWVG QLLHAVAGDS
VAAAAASI
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