Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_3342 |
Symbol | |
ID | 3904128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 3965586 |
End bp | 3966251 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637880667 |
Product | hypothetical protein |
Protein accession | YP_482428 |
Protein GI | 86742028 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01876] CRISPR-associated protein Cas5, Dvulg subtype [TIGR02593] CRISPR-associated protein Cas5, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00560307 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.552399 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGA CCCTGCCCCG TTCCCCCTCA GGGGACCCGC CGGTCGCCGT CCAGGTCTGG GCGGAAGGGG CGCTGTTCAC CCGCCCGGAG TTCCGGGTCG AGCGGGTGAG TTACCCGGTG ATGACGCCGA CCGCTGCGGT CGGAGTGCTG GAGTCCATCT TCTGGAAGCC GGAGTTCCGC TGGGCTCCGG TGGCAATCGA GGTTCTCCGT CCGCTCCACC AGTTCACCCT CCGCCGGAAC GAAACCTACG ATCTGCCGCT TCTGTCGGAC GCGGCAAGCG GAGTACGGCG GATCGACACG GTCGCTAACC GGGACCAGCG CAGCGCCGTC TGCCTGAAAG ATGTTGCCTA CCGGATCCAT GCGCATGTCG AACTCCAAGA CCATGCGACG AAGGACGTTG CCGCCTACCG GGAGCAGTTC CGCCGTCGGG TGAGCCGTGG TGCTTGCTTC CAGCAGCCTT ACCTCGGCGC ACGGGAGTTC CCCGCCTCCT TCGCACCGCC CGACGGCACA CCTGTGTGGA AGCAGGACGA GGACCTTGGC GTCATGCTGC ACCGCATCCA CCACGGCCCA CCGGTGGCGT TCGACTGGTT CACCGCCCGC CTCGATGCCG GCGTCCTGTA TGTCCCGCGG GCCGGTATCC GTGGTGACGT TCCGGCGGTG GCCTGA
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Protein sequence | MTLTLPRSPS GDPPVAVQVW AEGALFTRPE FRVERVSYPV MTPTAAVGVL ESIFWKPEFR WAPVAIEVLR PLHQFTLRRN ETYDLPLLSD AASGVRRIDT VANRDQRSAV CLKDVAYRIH AHVELQDHAT KDVAAYREQF RRRVSRGACF QQPYLGAREF PASFAPPDGT PVWKQDEDLG VMLHRIHHGP PVAFDWFTAR LDAGVLYVPR AGIRGDVPAV A
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