| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_3332 |
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| Symbol | |
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| ID | 3904118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 3949543 |
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| End bp | 3950892 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637880657 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_482418 |
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| Protein GI | 86742018 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0077596 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGC AGTCGAGCAC CTCCGGGTCC GACGGCGGGT CCGATGTCGC CGAGGATGTA
GCGAGCACGA TCAACACGGC GGTGCAGCGT CAGGTGGCGG CGGCGCGCCG CAGCGGCCGG
CGGTTCACCC CCACGGAACG CGCCGCGCTC GCCGAGGAGC TCCTCGCCCG GGAACTGGCC
GACATCCGGC GCGGCGCGGC CGACGCGCCG CCGCTGGACG CGGCCGGGGA GAACGAGGTG
CGGCTGCTGG TCCGCCAGGC CCAGTCGCAG CTGGGTTCGC TCGGCCCGTT CCTGCTGGCG
GACCGGTTTT CCGATGTGGA GGTCAACGGC GCGGTCAACC TGGTGCTGAC CGAGCGCGGC
AGCGGGCATC GGATCGAGGG ACGGTCTCCG TTCGGTAGCG ACGCCCAGGC GTTTGAGTGG
GTGGCCGAGC ATGCGGCGTC GGTCGGCCGC CGGTTCGACG AGAGCAACCC GTCGGTGCGG
TTCCGGCTGC CGAACGGGGT TCGGGTGCAC GCGGTGTCCC GGGTGACTCG CCTGACCCAT
ATCGACTGCC GGTTGTTCCG GCCCGGCCTG GACACCCTGG ACGGGCTCGC CGACGCGGGG
ATGTTCGGAT CTGACATCAC CGCCCTGCTC GCGGGGACGG CGGCTTTGCG TCAACCGTTT
GGGCTGATCA TCTCGGGTGG GACGGGAGCG GGGAAGACGA CGCTGCTGCG GGCGTGGGTC
AACGCCACAC CCGACGATCC GATCCTCGAC CGGATGGTGA CGGTGGAGGA TGAGCAGGAG
CTGTTCCTGG CCCCGGAGCG GTTCCGCAAC CTGGTGGAGT TCGAGGCCCG CGAGCGCAAC
GTCGACGGCC GCGGCGAGTA TTCGATGGCG CGGTATCTCG CGGAGAACCT GCGCCGTCAG
ACCCCGCACC GGGTCCTGCT CGGGGAACTG CGCCCCGACG GCGGCGTCCT GCCGCTGCTG
CTGGCGCTCG GGCAGGGCAT CGCCCAAGGG GTGGCGACGA CGATCCACGC ACCGAGCGCC
GCCGACGTCG TCGCCCGGCT ACGCACGTAT GCGGCGTTCG ACCCGGGGCG GGTGCCGGAG
GCGGCGGTGT TGGAGACCAT CGCGTCCACC GTCGATCTGA TCGTGCATGT CGCGAACCTG
GACGGCCGGC GGGTGGTCAC GAGCGTGCAT GAGGTCGGGG AGTACCGGGA GGGCCGGGTG
ACCTCGGCGG AGCTGTGGCG CTGGGACGCG AGGATCGAGC GGGCGGTACG CACGGACCTG
GACTTCTCCG ACCAGCTCGC CGCCAAGCTG CGTTCCGCCG GGGTCGGCCC GGCGGTCCTC
ACCCGGCGCC GGACGAGGGC GGCCTGGTGA
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| Protein sequence | MSLQSSTSGS DGGSDVAEDV ASTINTAVQR QVAAARRSGR RFTPTERAAL AEELLARELA
DIRRGAADAP PLDAAGENEV RLLVRQAQSQ LGSLGPFLLA DRFSDVEVNG AVNLVLTERG
SGHRIEGRSP FGSDAQAFEW VAEHAASVGR RFDESNPSVR FRLPNGVRVH AVSRVTRLTH
IDCRLFRPGL DTLDGLADAG MFGSDITALL AGTAALRQPF GLIISGGTGA GKTTLLRAWV
NATPDDPILD RMVTVEDEQE LFLAPERFRN LVEFEARERN VDGRGEYSMA RYLAENLRRQ
TPHRVLLGEL RPDGGVLPLL LALGQGIAQG VATTIHAPSA ADVVARLRTY AAFDPGRVPE
AAVLETIAST VDLIVHVANL DGRRVVTSVH EVGEYREGRV TSAELWRWDA RIERAVRTDL
DFSDQLAAKL RSAGVGPAVL TRRRTRAAW
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